RNA id: TU116912


Basic Information

Item Value
RNA id TU116912
length 315
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G93689
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25517286 ~ 25517600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaatgtggggaagcaataaaaaaggcaaacacaatgttagggtatattgtcaaaagtgcagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116881 lncRNA downstream 136248 25372933 ~ 25381038 (-) True G93660
TU116853 lncRNA downstream 406196 25110890 ~ 25111090 (-) True G93641
TU116851 lncRNA downstream 410204 25106802 ~ 25107082 (-) True G93639
TU116811 lncRNA downstream 507682 25007684 ~ 25009604 (-) False AMCG00017844
TU116793 lncRNA downstream 567038 24949968 ~ 24950248 (-) True G93591
TU116944 lncRNA upstream 291944 25809544 ~ 25809853 (-) True G93718
TU116972 lncRNA upstream 427541 25945141 ~ 25946954 (-) False AMCG00017861
TU116973 lncRNA upstream 429635 25947235 ~ 25948594 (-) False AMCG00017861
TU117044 lncRNA upstream 740496 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 835917 26353517 ~ 26353724 (-) True G93816
AMCG00017855 mRNA downstream 150736 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017852 mRNA downstream 293005 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017850 mRNA downstream 412144 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017851 mRNA downstream 416655 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017846 mRNA downstream 436855 25075605 ~ 25080431 (-) True AMCG00017846
AMCG00017862 mRNA upstream 305376 25822976 ~ 25923225 (-) True AMCG00017862
AMCG00017861 mRNA upstream 428160 25945760 ~ 25957648 (-) True AMCG00017861
AMCG00017866 mRNA upstream 494888 26012488 ~ 26015942 (-) True AMCG00017866
AMCG00017867 mRNA upstream 515515 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017869 mRNA upstream 559128 26076728 ~ 26082767 (-) True AMCG00017869
TU116215 other downstream 2195332 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 2195332 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 2195332 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 6097930 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 495061 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 495061 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 586426 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 591460 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 2585699 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile