RNA id: TU116964



Basic Information


Item Value
RNA id TU116964
length 637
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G93733
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25949736 ~ 25950372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGAATGCACTGATGGATGTTGCATTCCTCTCGGTCTTCTGGCATAAGGAACGGGTCACAATTGCTGCTTTGCGTCTTATCGTCTGCTAGGCAGCGGACTTCTCTGACCCTGTATCCCCCCTCGCACGATTTGGAGCACTACAGGCAAGGAAAAATCACATGACCATTTGTAGCTTATTAGCTCTGACCATAAGGGACCAGTAGCATGGAAGTACTGTGTAGGGCTCTCCACCTCAAAGCCTCCACAGACCTCCCCatgttttgatttccttttcCACTGGTCTTCTacccattcattttaaacacatctAGAAGTAGGTATCTTCATGTTCAGCACTAGATTTTCAGTACCTGTTTCACTATCAAGCTCAGGAGATATCAGCCGTTCACTCTCACGGTTGTGGAGTCCTAGGTAGCTTTATTTGCATGAACCTCTGAGCTTCAGCACTCACCACACTCCACTCAGTAGTAAACCACTTGGCCCCACACTTCTTCAGGAAGCAGTCCTGTGCCGCGGGAGGTGGCTGGAGGTGACCACATTCCCAGAGGTCTGCTTCCATGAAGCTGCTGTTGGACTGTCTGAGGCACACCACACTCCGGGTCTTAGTGCCATTGCCACACTCTGCAGAGCACTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116911 lncRNA upstream 432099 25517301 ~ 25517637 (+) True G93688
TU116898 lncRNA upstream 540127 25408517 ~ 25409609 (+) True G93675
TU116871 lncRNA upstream 637389 25309702 ~ 25312347 (+) True G93651
TU116812 lncRNA upstream 897362 25050393 ~ 25052374 (+) True AMCG00017843
TU116788 lncRNA upstream 1000468 24947991 ~ 24949268 (+) True G93588
TU116965 lncRNA downstream 782 25951154 ~ 25951398 (+) True G93734
TU116966 lncRNA downstream 1696 25952068 ~ 25952377 (+) True G93735
TU116967 lncRNA downstream 3132 25953504 ~ 25953740 (+) True G93736
TU117087 lncRNA downstream 548340 26498712 ~ 26499170 (+) True G93842
TU117124 lncRNA downstream 965541 26915913 ~ 26916481 (+) True G93878
AMCG00017860 mRNA upstream 3848 25924661 ~ 25945888 (+) True AMCG00017860
AMCG00017859 mRNA upstream 172298 25759508 ~ 25777438 (+) True AMCG00017859
AMCG00017858 mRNA upstream 284541 25641815 ~ 25665195 (+) True AMCG00017858
AMCG00017856 mRNA upstream 324066 25613882 ~ 25625670 (+) True AMCG00017856
AMCG00017857 mRNA upstream 375029 25557885 ~ 25574707 (+) True AMCG00017857
AMCG00017863 mRNA downstream 66534 26016906 ~ 26022526 (+) True AMCG00017863
AMCG00017865 mRNA downstream 72586 26022958 ~ 26032361 (+) True AMCG00017865
AMCG00017864 mRNA downstream 101052 26051424 ~ 26068840 (+) True AMCG00017864
AMCG00017868 mRNA downstream 155125 26105497 ~ 26109489 (+) True AMCG00017868
AMCG00017871 mRNA downstream 285642 26236014 ~ 26250646 (+) True AMCG00017871
TU116638 other upstream 1234115 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 5127789 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 5134190 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 6421443 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 6526057 19421310 ~ 19423679 (+) False AMCG00017710
TU117380 other downstream 2692358 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 3483040 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 6457057 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 6510926 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 6557318 32507690 ~ 32601449 (+) True G94857

Expression Profile