RNA id: TU117033


Basic Information

Item Value
RNA id TU117033
length 2488
RNA type TUCP
GC content 0.48
exon number 2
gene id G93795
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26104026 ~ 26107805 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGCATCGGGTTGTAATTTGTGTCCACCTTACATTTGAGTTATTATAGACCCTATGTGTGTCTggatttgtttatatgtttctatttattaatatgatacATATATGTGCAGCGAATTCCTAACACATTCCGCAGGTTTACATCAAAGCAACGTGTTGCAGGATCATTACAGTGTCTGTCCTGTTTATTTGCGCTTTCATTGGGTTGCACTTCTTGCTAAATAAACTTTCTGGATACTTTTTTTAGTTATATTTGTGGTTTGTGATTTCTGTCTTCATTTCATGCtgcttattgtaaagtgttgcatttcaatttaacaCTATTTGAATCATTGTAATTAgtcacttaattaattaaattgcgACACTTATCTGGAGGTAAAGGagcattaaatgtaaatgcgCTGGTTGTACAATCTGTCTTTTAACAGGGTTGTTTTAACGCAGATCTTTAACTTGCTTATATGCTTTGCCCAGTGGGATATTTTTGTGtctaatacatacattaaatgacaGGATCCATCGTGGATTTCATGCAAAAGTTTGAGGAACATCGGATCTTACGTGAGTTCATTAAAATGtCATTAATGTGCGGATCTACAGGCTACACAAATGAACACCCCTGTGCGTCTGAGTGACCGATGGAGAAGTAGTGCAGCGCAGACGTCcgcaccaatgggatcgctggaaTTGTGCAGcgctgcgcagaactgcggacgtCTGCGCTGAAACCGCGCTGTACTTACGAGCGGCGAACTGGGCGCTGTCCGGCTCCCGGTCGTTGGTGCAGCCGCCCTGGTCCAGCCTGTGGTCGGCGGCCGCGCAGCAGTACCTCAGCGCGCAGGAGCCGCAGCACACCGTGGCGTCCAGGGTGTCGAAGTCCTCCGGGCACTGGAAGCCGTCGTGGTAATTCCCATTGCCGCCCAGCCAGCCGTGGCAGTACTCCCCCTGCGCGTCCGACAGGCGCCCGGTCCAGGTGAAGTAGCCCAGCAAGAGGCAGGGCAGCAGGCGCAGCATCCCGGGGAGCGGGCCGAGGCTCTGGACGACTCTTGGCTAATGGATGTGAGATCCGCGGCCCCACTGCCTCCTCCTGGGTGCGCGGTGACAGACTGGGGGCGCTGCCTTCACTGGGACACCTCGGCGGTATCACTGCGCCCCATCCTGCTTCACGTCGACGGCACCCAGGTCACGCACTTGTACAGGCCAGGGAAGGGCGCAGGAGAGGAGCAGCCCCCCGGTGCGCCATGCTGTCTGTATATGATTTGAAAAGCCGTGAAAAGCCGTCCGGAGGTGTGACAGCCGCCCCTCGGCGCACGTGCTGCCGCCGCGACCCCCCGCAGCTCCGTGCGGCTGCGCAGTGCGTGCGGTCCTGCTGCTCCAGGTGCAGGTCAGGCTCGGTGCTGCATGGGGAGGGTCAGCCACGCAAGTGTCgtccgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgttgcaCTCTCTCTCGCTTCAGTTCAGAGCACTGGCTGTTGGGACCGCCTGGAGACGCGCACTTCTGACGTTGCTAGAGCTGACGTGCGCCAGtggtggggtgtgggggtgggggggctctgGACATCACAGACTATAAACTTATTTCAGTGGAATTCAAAAAGCCTGGACTTTATAGCATGCCTGCACAACCTAGATGTATTAGTTGCTTAGAAGTATTTCTCTCCCATTTTCTTCCTTGTTctttgtgtaataataataaccacagcACCTATTCTGTGTGCATGCTTCTAAAATTCCCAGACAACGTAAGAGATGGTCCATAGTCAATGTAATGCCACCACATATGACAGATGACTCAACATTGCAGatatttgttgtttctgttccaCTTATAAGGGTTTGATGGACTTTGCAAACCCTGTAATCAATCCAATACCGCTTTGACACCAGCTTTTTGTGGGTAAAACGCACAGCATGCCAATAGAAAGGATATCACATTTGTGCCAGTGCCAGTTTTCTTCAATATGGCCATTAAACATCTTCTGCAAAGCAACTTTCCATGAACTGTGGTACTGTAGTTTAAAAAGTCAAGTTCAATGCTTAGGGTGTGTGAGAtgtaaaaagattaataaacatCCTAAATTGTTGATTATttgatgtgtatgtgtgtgattacAATATGACGTATCCTCCAACACAATGCAGAAACAGCACAAACTGACCCTGAATTCGTCATAAGGTCAAGTTATTCCCTTTGGCTGATGTTTTCTAAACCTAACAGTGGCTCGGTTTCAGGAAAAGCTAAACAAAGAGAGTCTAACTATCTCAAATACATAAGATATAAGACACCTGCCATGCATCTCATACACAACcccaaaatgcattttcactttacaattgtattaatgCATTGCCCTCTAGTGGTTATTGGAGGAGAATTGAACTTGCTTTCTGCTGATTGTATGCTGTTTCAGTGGCCGTTTGGGATTTgtcaacatgttttaaatgttcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116973 lncRNA downstream 155432 25947235 ~ 25948594 (-) False AMCG00017861
TU116972 lncRNA downstream 157072 25945141 ~ 25946954 (-) False AMCG00017861
TU116944 lncRNA downstream 294173 25809544 ~ 25809853 (-) True G93718
TU116912 lncRNA downstream 586426 25517286 ~ 25517600 (-) True G93689
TU116881 lncRNA downstream 722988 25372933 ~ 25381038 (-) True G93660
TU117044 lncRNA upstream 150291 26258096 ~ 26258367 (-) True G93802
TU117058 lncRNA upstream 245712 26353517 ~ 26353724 (-) True G93816
TU117088 lncRNA upstream 391109 26498914 ~ 26499177 (-) True G93843
TU117271 lncRNA upstream 1654881 27762686 ~ 27767331 (-) True G94008
TU117276 lncRNA upstream 1671232 27779037 ~ 27784050 (-) True G94012
AMCG00017870 mRNA downstream 6098 26096440 ~ 26097928 (-) True AMCG00017870
AMCG00017869 mRNA downstream 21259 26076728 ~ 26082767 (-) True AMCG00017869
AMCG00017867 mRNA downstream 54079 26033115 ~ 26049947 (-) True AMCG00017867
AMCG00017866 mRNA downstream 88084 26012488 ~ 26015942 (-) True AMCG00017866
AMCG00017861 mRNA downstream 146378 25945760 ~ 25957648 (-) True AMCG00017861
AMCG00017872 mRNA upstream 4308 26112113 ~ 26193833 (-) True AMCG00017872
AMCG00017876 mRNA upstream 176160 26283965 ~ 26407993 (-) True AMCG00017876
AMCG00017877 mRNA upstream 329956 26437761 ~ 26439111 (-) True AMCG00017877
AMCG00017874 mRNA upstream 336613 26444418 ~ 26452343 (-) True AMCG00017874
AMCG00017875 mRNA upstream 350413 26458218 ~ 26467868 (-) True AMCG00017875
TU116981 other downstream 88534 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 88534 26012661 ~ 26015492 (-) False AMCG00017866
TU116215 other downstream 2782072 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 2782072 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 2782072 23318126 ~ 23321954 (-) False AMCG00017780
TU117034 other upstream 1255 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 1995494 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 2766356 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 3161430 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 4520183 30627988 ~ 30658493 (-) True G94543

Expression Profile