RNA id: TU117276


Basic Information

Item Value
RNA id TU117276
length 3441
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G94012
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27779037 ~ 27784050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAAGCTCTTGAAGTCCGGCCCATCGGTCCTGGGCTCTGGCAGGGGCATCTTGGCGTGCAGGGTCTCCATCAGGGCGGGGTCGTTGATGATGGCCTGTTCCCAGGGTGAGTGGTACGACCTGGGCACGGCGGTGCTGTTGAACCTCTCCGGAGGAATGTCCTTCAGAGGGACACCGTAGCCTGCGCCCAGGGGGCAGGGGAGACATGGCCGTTTCAGGGTCAGAGTCACGGCTTACAGGCTTACTGTCCTTGTCATAATagttataattttaatgttttctttatctcATCCATTTAAACCACTTAGGAAACAGATTCACAAGCCAACTTCAAATCTTTATTGACACAAAGCCTCGTCACTCAGCTCAGTCACAgagcactgaaaataaatggccGGTAATGGACTTGTTTAATTACTATTACATTACTATGATCCGTACTCGAAAAATACTCCAGATGTGTGATTTGTGCAGAGGTTGGTGTCATGAGGGACAGATTTCCCAGATTCTCAGGTAAGTCCTGGGAAGCCCAGTGTCCTTTAACTGGGATTGCAGAGTTAACACTCATTTTATTATCACCGCActtgcatttgcttttcatttgggGCAGAGATgtctaaccctggtcctggagagcaacagggcctacaggtttttgttttatccagatcattaactgcttaattgagccaattgtgggtcttaattaggcaaaatgtccctgtgttgcAGATATCTAGtaattggtgatttagagagaaCTGGGAAACATGCAGGATTGTGTCTCTCCGGGAACAGGGTTGGCCGCCCCCTGATTTAGGGCCTAGTTTTGGCATTGCTTTAAATCATTGTGCGCCAAGATgaacaaaaaaaggttttgaaacGCACTAATGAAACGCTCATTTGGTCAAACATGAGGGTCTCATCGTAGTCCTGGAAGAGCGGTCTTTACACACACGCTTCCAGAGAAACAGGGCATCCTGAGTGCCTGACCCTCTCGCTCAGATTACACAATTGTTTTCCTGAGCGTTTCATGctaaaggaaacaggaaggaaCGGCCACCTCCCCTTTGGCCCGCAATCTCCACAATCTGCCCTAATGCGCTCGATACCGGAGACCCTCCCCCGAACCGCGGCGCTCATCTCACTGCACAGACGCTGCTCTGCATTATCAGCTGTGGGGGGGATACGTTGTGACGGCAGTAGCTGCAGGAAACAATGagcattcataaaaaaaaatgctgggcTATTGactttatgaataataataagaaatactccaaagatatatatttattacgcATAAAGGAATGCTAGTCTTGACATAGGAGAGAATTTATAACAAACTTAATACTATATCAACATAATCCTCTATTATTCATCTACTTATAGAGATTCAAACGACAATCTGTCTGCAAAAATTGCGGGATGTGTGAGATGAAACCGTGACACTGTCCTTAATTTGACAACGTAAATAAGACTACATACAGATTGAGTCCATAGTTTTCACATGGCTCGTACAAATACTTTGATTTGATGCAaatttcttttatatattaaaaacaacaacaactactactaataatgttCTAATAGTTCCTTAAGCATTGTGTATTACATGTCCCTCATCCTGGATTATTTACTTAAAGTGAATCTTAAAAAAGGAACATGTCAAATAGAAATGAAGCCCTATACAAACAGTAGATATTTTTCCCGATAAGCCAAAATTGTATTATCCCTGGGAAACATACTACGACACGTCTGTGTTTTTAAGTCTTATTTCTATCCAGACATGGACCCTGTTTCTGTGTGAAGCTAATACCATGCATTCAGGACAGCTCCTGTTAGAAAAATGTTAACCCCCTCCTCCCTGTTTATGCCAGTTTCAGCCTTTTCGCACGAATGCAGAAATGTGTTATTGACCACAGACGACGTCAGCTGAACACTTGAAGACCAACCCACTGGGGGATTTTCCAGGAAAACTGCCATTATGTGAATGAACTTCCCACACGATCCTCCAGCCCTGCTGTCGATGACTGTGGTCTGAGCCATGTGTGAAGCGGCTCTGGGCACTTGTGGACTGCTTCTGTAAAAGTAGAGTTGAGGGACATGTTCTCTGTGAATTAAACCGGGTGGGTAGGTGTTTGGATGGGAAAGAGAAGGCTGCTGGGAGTGAAGCCCCCCAGCCCAGTGTCCCACCATGTCGTCCAAAGACGGCACCACTGAAACATCTGTGTCAGCTACAGCACAACTGCCTCCGTGAGGGTTAAAGGGTTTAAAGGGTAAAGTGCACTTCCTACTGGatgccaaccccccccccacactccctGGCTCCCGCTTGTAAACGAGATCTTAATCTCAGTGCGGATGGAGttcctgtttaaataattacaccGATACAGGAATGAAGGAAGAAATAtgtaaaagaagaaagaagaaaggagaaatagacagatagagagagaaggaaataaGGGAAAGGACAGCCTGTCGACAATGCTGAGAGCTGGAGTCGTCGGGTCAGGCTGGGCCAGGAGGACGCCGCGTTCCCCATTGTCTCTGTCTACATAAGCGGCCGCAGATGACATAACAGATAGCGCGGCTGTTTGGATTGTGTGGGGACTGGGGAAATGCCTGGCATGCCTTTGGTACAAATAGCAGACCGTTACGCAACAGTTTCCATCGCCGCCTGAAGAGCACACCCCCCCTCTCCGCTCTTCCCCGGctaatatttaattcagacgAATCGCAGAGACACTGCTGCCCAGATGCTGCACTCGACTCCATCCGCTAACTTCTCCTCACATTTAAATAACGATCGCAGAAAAAAAGAgcagtgtatattattatacgCAAGAAGagcatataaacacaaaaacactcatATATACGTGTCTGAACACTTCTCCCTGGATCTGCTGATAATTAGTTGcgtaaaaataaggaaaatggaTTTAAATTGCGTCTGAAAGTGTGTGTGCTCTCAGCCTGAATCGTAAGAGCTGTGCCGCTGATTTAAGCCCTTTTCTCGGGTGGGATAAGGATATGTCACTGCGAGACCCCCCAATTCTCATGTTGATTGACAGTGTGGCCCCCAGTCTATTCCTCTGCGTTCACCCACCTGGGGCGATGCTGTCGGGGTTCGGGGGGTTCTTGGGGTCGGGCGTGTTTGGGGGTGTTTTCGGTGACTGTTCCACCTCCAGGCTGGTCCCGTCGgctttgtttctctctgctgTTTCGCTGTCCTGAGGCTGAAGAGACACACAGTGTTCATCTGCACGTTGGCCTCGTTCTGGAAGTTCTCAAAGGTGTACTTCTCCGACCTCCGCTGGCGCATCTTGAAGAGGCGTGATCCCCGGTTGGACTGCAGGGACAGCTCCTCCAGCATGATGTCCTTGGGGATGCTGATCTTCTTGCCCAGGTCCATGGGGTCGGACTCT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117271 lncRNA downstream 11706 27762686 ~ 27767331 (-) True G94008
TU117088 lncRNA downstream 1279860 26498914 ~ 26499177 (-) True G93843
TU117058 lncRNA downstream 1425313 26353517 ~ 26353724 (-) True G93816
TU117044 lncRNA downstream 1520670 26258096 ~ 26258367 (-) True G93802
TU116973 lncRNA downstream 1830443 25947235 ~ 25948594 (-) False AMCG00017861
TU117305 lncRNA upstream 54201 27838251 ~ 27839790 (-) False AMCG00017902
TU117306 lncRNA upstream 54201 27838251 ~ 27839790 (-) False AMCG00017902
TU117307 lncRNA upstream 54201 27838251 ~ 27839790 (-) True AMCG00017902
TU117308 lncRNA upstream 54201 27838251 ~ 27839790 (-) False AMCG00017902
TU117336 lncRNA upstream 309418 28093468 ~ 28097158 (-) True G94060
AMCG00017899 mRNA downstream 55306 27698901 ~ 27723731 (-) True AMCG00017899
AMCG00017895 mRNA downstream 346461 27427479 ~ 27432576 (-) True AMCG00017895
AMCG00017893 mRNA downstream 352805 27415574 ~ 27426232 (-) True AMCG00017893
AMCG00017894 mRNA downstream 370480 27400504 ~ 27408557 (-) True AMCG00017894
AMCG00017896 mRNA downstream 383377 27368219 ~ 27395660 (-) True AMCG00017896
AMCG00017902 mRNA upstream 54204 27838254 ~ 27839681 (-) False AMCG00017902
AMCG00017903 mRNA upstream 58162 27842212 ~ 27844771 (-) True AMCG00017903
AMCG00017906 mRNA upstream 314855 28098905 ~ 28120641 (-) False AMCG00017906
AMCG00017907 mRNA upstream 649982 28434032 ~ 28443288 (-) True AMCG00017907
AMCG00017908 mRNA upstream 673646 28457696 ~ 28457938 (-) True AMCG00017908
TU117034 other downstream 1668963 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 1671232 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 1763545 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 1763545 26012661 ~ 26015492 (-) False AMCG00017866
TU116217 other downstream 4457083 23318126 ~ 23321954 (-) False AMCG00017780
TU117337 other upstream 319249 28103299 ~ 28144589 (-) True AMCG00017906
TU117465 other upstream 1090111 28874161 ~ 28875923 (-) True G94172
TU117547 other upstream 1485185 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 2843938 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 4478726 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile