RNA id: TU117385



Basic Information


Item Value
RNA id TU117385
length 1125
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G94104
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28651148 ~ 28652294 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCTAACGAACTTCTAGGCTTTGCCAGTCGTTCTTAAAGACTCTTATCTGGTGTGATGTTATACTACACTCGTAATTATCAGCTCAtggtgagtgtgagtgtgcggGGGGGGgcacacaaatacaatacacaggGACCACAGAGAGCAAaactgacatctagtgggggaaACGAAGAATACTAACACCAAGACGGTGCCTGTGATTGGACCGCATTCTCTATTTCATAAACTTTAGAGgaaccacaacacacacacacacacacacacacaaacacacacttgaCTTGACATGAAAACTACAGAATCCGCTGAAATAACCCGGTTCTTACCGAGTTAACGATGGCTGCAGCCTCATCCTCGCTGCATTTGAAAGGGCTCTCACATACCGACACGTTTTGACtgtggagaagaagaaagaaagggagaaaaaggaTTGAGTGAATCAGTCTTCTCATGTCGGACTTCCCGAACGAACTTCTGAACGTTTCGCCCCCGTGCTGAAGATAATGCATCTCCGTCTCTTCTCTGCCGGCCAGAAAATCTTCAAAAGCTAGTTCTCTCCCAGATCTAGTATCCTATATGGGCACTGAAAGTTCACGTCTCAACCCTTTCTGAAGTTTAAATCATCCatgcatccatccatcttcgaaaccgcttatcctggtgagggttgcaggaagtttaaataattttctcttAAATAAATCAAGGGCGTAGAGTTAtagtgaatatataaataaatatatatatatattatatatactggCTTTGTTCTAGATCAGACTGCTTCTATCCCAGTCtcactttgtaaaataaaaactacagtcTTCTATGGCTAAATCCGTTAAGTTACTTTGCCTACATTTACAATGATGATGGGACGGCAATAACCTGAGGGTCACAGTTTCAAATTGTTGGCGAGACACTGGTGTTGTTTACCCAGAATGCTCTAATAAAGAAGCAAGTGTCCATAAGTACCTTCGCAAGTAGCTTCAGATCGCGAACGATCACTaaagaacaaattaagagaaatACTGAATTTATCTCGCTTTAATCCGATTCGGACACCGACAAACTCTCCTGAGGAGTTTCGTGTAATCGGTCGCACTCAAGACAAAACTGNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117345 lncRNA upstream 206223 28442766 ~ 28444925 (+) True G94069
TU117333 lncRNA upstream 549054 28100733 ~ 28102094 (+) True G94057
TU117331 lncRNA upstream 551934 28097733 ~ 28099214 (+) True G94055
TU117309 lncRNA upstream 809887 27841053 ~ 27841261 (+) True G94039
TU117246 lncRNA upstream 950420 27698724 ~ 27700728 (+) True G93986
TU117487 lncRNA downstream 387716 29040010 ~ 29041944 (+) True G94189
TU117545 lncRNA downstream 621453 29273747 ~ 29274011 (+) True G94236
TU117555 lncRNA downstream 633899 29286193 ~ 29286745 (+) True G94245
TU117566 lncRNA downstream 654806 29307100 ~ 29310853 (+) True G94255
TU117571 lncRNA downstream 670278 29322572 ~ 29323345 (+) True G94260
AMCG00017910 mRNA upstream 4398 28631892 ~ 28646750 (+) True AMCG00017910
AMCG00017905 mRNA upstream 732008 27916426 ~ 27919140 (+) True AMCG00017905
AMCG00017904 mRNA upstream 741584 27907744 ~ 27909564 (+) True AMCG00017904
AMCG00017900 mRNA upstream 814022 27811222 ~ 27837126 (+) True AMCG00017900
AMCG00017901 mRNA upstream 864066 27773853 ~ 27787082 (+) True AMCG00017901
AMCG00017914 mRNA downstream 21114 28673408 ~ 28692303 (+) True AMCG00017914
AMCG00017913 mRNA downstream 47749 28700043 ~ 28705029 (+) True AMCG00017913
AMCG00017915 mRNA downstream 69645 28721939 ~ 28735137 (+) True AMCG00017915
AMCG00017912 mRNA downstream 115999 28768293 ~ 28787501 (+) True AMCG00017912
AMCG00017920 mRNA downstream 217580 28869874 ~ 28897965 (+) True AMCG00017920
TU117380 other upstream 7165 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 3935527 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 7829201 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 7835602 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9122855 19444172 ~ 19528293 (+) True AMCG00017712
TU117593 other downstream 781118 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 3755135 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3809004 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3855396 32507690 ~ 32601449 (+) True G94857

Expression Profile