RNA id: TU117465


Basic Information

Item Value
RNA id TU117465
length 725
RNA type TUCP
GC content 0.66
exon number 2
gene id G94172
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28874161 ~ 28875923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAGTGCTCGCCGCTACTTTGTCTATGTTTTTTTACACCGATAATAACGCATTTGTAACTCAGTCCACTTCGGATGTCACAGGTGGCTGTCAATCATCTCCCCTCCGAGTGCAGAGATCAATCGGACCGCGCCGCCGGGAGCTACAGAGTATCCATCCCGCCGCGCCGCGCCTGCGCCGTGCCGCCGCCGCCACTCACCCAGCTCTGCGCGGCGTTGCTGAGCTTGGCTTTCTTGTGCGAGCCCCCGGGGGTGTCCATGTCGCTGCCGCTCACCGGGCCCGACGCGCCGACTCCGAGCTGATGAAGGCGGTGTACGTGCAGGCTCGACCGCCGGGGCTTTCGCCACAACCCGGTACCGACGCGGAGCGAGAGGCTGGAGCGGAAGCGCAGGCGCAGCGCTGCCGGAAGTGACGTCTGCGGCCTTGGAATTGGCGGTCGCCTTGACAACCGGCATGCGCAAGATGCCGTAAATCGCGTCGCGCTGCAGCAGAGCGGGCCGCCCGCGGGACAGGCCGGGCGCTGGTACGGGCCGGGTGGGGACCCGTCTCGGCCAGGGCCCCTACGAGTGCGCCTTCATACTAACCACAGAGACAGCGGCCCCTGATTCACTGCGCGGTTCATCCCCAGCCGCGCTGATTCCGCCGTAACGGACGATGCAGAGCATCCCAACAGCTGTAATCTCACGGATCCTGCCGGGGCTGCtcgtggtgtggtgtggtgggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117425 lncRNA downstream 138417 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 448918 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 453899 28419916 ~ 28420262 (-) True G94073
TU117336 lncRNA downstream 777003 28093468 ~ 28097158 (-) True G94060
TU117305 lncRNA downstream 1034371 27838251 ~ 27839790 (-) False AMCG00017902
TU117522 lncRNA upstream 331547 29207470 ~ 29207804 (-) True G94218
TU117556 lncRNA upstream 410284 29286207 ~ 29286747 (-) True G94246
TU117670 lncRNA upstream 1036059 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 1120326 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 1122431 29998354 ~ 30002282 (-) False G94359
AMCG00017918 mRNA downstream 22009 28846378 ~ 28852152 (-) True AMCG00017918
AMCG00017917 mRNA downstream 32525 28814981 ~ 28841636 (-) True AMCG00017917
AMCG00017916 mRNA downstream 175642 28694548 ~ 28698519 (-) True AMCG00017916
AMCG00017911 mRNA downstream 209466 28649941 ~ 28664695 (-) True AMCG00017911
AMCG00017909 mRNA downstream 304506 28568960 ~ 28569655 (-) True AMCG00017909
AMCG00017924 mRNA upstream 155956 29031879 ~ 29049397 (-) True AMCG00017924
AMCG00017925 mRNA upstream 203086 29079009 ~ 29091940 (-) True AMCG00017925
AMCG00017926 mRNA upstream 224585 29100508 ~ 29117642 (-) True AMCG00017926
AMCG00017928 mRNA upstream 382582 29258505 ~ 29263533 (-) True AMCG00017928
AMCG00017929 mRNA upstream 393358 29269281 ~ 29272932 (-) True AMCG00017929
TU117337 other downstream 729572 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 2764087 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 2766356 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 2858669 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other downstream 2858669 26012661 ~ 26015492 (-) False AMCG00017866
TU117547 other upstream 393312 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 1752065 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 3386853 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 3395771 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 3418097 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile