RNA id: TU117522


Basic Information

Item Value
RNA id TU117522
length 335
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G94218
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29207470 ~ 29207804 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacacacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggatccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117425 lncRNA downstream 471726 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 782227 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 787208 28419916 ~ 28420262 (-) True G94073
TU117336 lncRNA downstream 1110312 28093468 ~ 28097158 (-) True G94060
TU117307 lncRNA downstream 1367680 27838251 ~ 27839790 (-) True AMCG00017902
TU117556 lncRNA upstream 78403 29286207 ~ 29286747 (-) True G94246
TU117670 lncRNA upstream 704178 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 788445 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 790550 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 790550 29998354 ~ 30002282 (-) True G94359
AMCG00017926 mRNA downstream 89828 29100508 ~ 29117642 (-) True AMCG00017926
AMCG00017925 mRNA downstream 115530 29079009 ~ 29091940 (-) True AMCG00017925
AMCG00017924 mRNA downstream 158073 29031879 ~ 29049397 (-) True AMCG00017924
AMCG00017918 mRNA downstream 355318 28846378 ~ 28852152 (-) True AMCG00017918
AMCG00017917 mRNA downstream 365834 28814981 ~ 28841636 (-) True AMCG00017917
AMCG00017928 mRNA upstream 50701 29258505 ~ 29263533 (-) True AMCG00017928
AMCG00017929 mRNA upstream 61477 29269281 ~ 29272932 (-) True AMCG00017929
AMCG00017930 mRNA upstream 65247 29273051 ~ 29273284 (-) True AMCG00017930
AMCG00017933 mRNA upstream 67090 29274894 ~ 29283831 (-) True AMCG00017933
AMCG00017935 mRNA upstream 81025 29288829 ~ 29304804 (-) True AMCG00017935
TU117465 other downstream 331547 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1062881 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3097396 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3099665 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 3191978 26012661 ~ 26015492 (-) False AMCG00017866
TU117547 other upstream 61431 29269235 ~ 29273168 (-) True G94238
TU117930 other upstream 1420184 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 3054972 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 3063890 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 3086216 32294020 ~ 32295433 (-) False AMCG00018007

Expression Profile