RNA id: TU117547


Basic Information

Item Value
RNA id TU117547
length 1562
RNA type TUCP
GC content 0.51
exon number 3
gene id G94238
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29269235 ~ 29273168 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGCCTGCGGGACACAGACACCCCGGAACAGGAAGGACGGGCCGTCAACACACCGCGGACAGACTTCCTTCTCCGGCGGACGGACACCCCGCACACGGACTCAGTCGGCCGTCTAGACGATGTGACGATCGACAGCATTTGTTCAACATGGGGGAGGGCGCTCGTCTCCCGAATGTGCAGTTGCAATAAACCGTCGCCTGATTTGGAGTAACCTGCGCTAGCTGGGCGACTGACATGCGGGGCGTCTGCGTGGCGCTGCTGCTGTCCGCCGGGGTGGTCCTGTGCTCCTGCCAGGCAGCCCCCCGCGACCCGCAGACCCCGGACTGGCGCCTGACGCTCAAGACCATCCGGAACGGCGTCCACAAGATCGACACCTACCTGAACGCGGCGCTGGACCTGTTCGGGGGCGAGGACGGGCTGTGCCACTACAGCTGCAGCGACGTTTGACATCGGCATCCCCTCCATGACCAAGTGCTGCAACCAGCACGACCGCTGCTATGACACCTGCGGCAAGGACAAGCACGACTGCGACGAGGCCTTCCAGTTCTGCCTGGCGACCATCTGCAGGAACGTCCAGAAGACCTTGGGCTTGTCTCAGAGTGTCCAAGCCTGCGAGTCCACGGTGAGCCTGCTGTTTGATGCTGTCATGCACTTGGGGTGTAAGCCGTACCTGGACAGCCAGCGCGCATCCTGTATGTGTCGCTATGAGGAGAAACTGGACCTGTGAGGGGAGCCCAGGCTGTGAGGACTATTGACAACACGGCCAGATCTTTCTCTCGTGCCTTAATTAAGAGGACAGTGGGACGGTCATTCTTGATTCTTGATGTTGCTGACACCCAACGAAGGACAGTAACAGACTGTGAGGGACTGACACTGTGATTGCACCATTCTCTGCATTTATTCTTGTTATGTACAGACATTATTTTGTTGCTTGTCTGTTTTTAGTGTTCAATTTTTTTCTAAATAGTTTCTAAACATCTCACACTCTGTACCACATTTGAatagaagtaaaacaaattgtatCTAATATGCATTGTTGCCTCAAGGCAATAAACCTTTATTGTAATTGTGGTGGTTAAAACACACAGTGCCTTAATATGTACTTTAATTGTTACCCTGATATTCACTGCCAGATGGATATTGTCCAACATGATTGGGATAGTAAAGCAAAATGTGtctacagtgtgttgtgtttgtctgaaaataaatcttagTTGCTGATGATATCGTATCGATCTGGGACTGTTCTGTTGAGGGACCATAGTGTATcgtctgtctgtcagttctgtgtgCTTGGGATGGGGCAGATCTTTCTGGATCTGATTAAGTGAGCAAAACTGGATTCTGGGGTCCCAAAGGTTAACCCCACGTGAGAACAGGAGGGGTGCTGTGATTGGGGTCACAGGGAGCCAGAGATATATAGAGGTGCCTCAGAAGTGGTTTAGAGAGACTGAGCTCAGTGTGTCtttgaaagctgtttttttcccaGAAATAAACCTGTAGCAGGAATCCCGACTCTctctatttgtttgttgtttttgtccgGGGTGGATCCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117522 lncRNA downstream 61431 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 533491 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 843992 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 848973 28419916 ~ 28420262 (-) True G94073
TU117336 lncRNA downstream 1172077 28093468 ~ 28097158 (-) True G94060
TU117556 lncRNA upstream 13039 29286207 ~ 29286747 (-) True G94246
TU117670 lncRNA upstream 638814 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 723081 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 725186 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 725186 29998354 ~ 30002282 (-) True G94359
AMCG00017928 mRNA downstream 5702 29258505 ~ 29263533 (-) True AMCG00017928
AMCG00017926 mRNA downstream 151593 29100508 ~ 29117642 (-) True AMCG00017926
AMCG00017925 mRNA downstream 177295 29079009 ~ 29091940 (-) True AMCG00017925
AMCG00017924 mRNA downstream 219838 29031879 ~ 29049397 (-) True AMCG00017924
AMCG00017918 mRNA downstream 417083 28846378 ~ 28852152 (-) True AMCG00017918
AMCG00017933 mRNA upstream 1726 29274894 ~ 29283831 (-) True AMCG00017933
AMCG00017935 mRNA upstream 15661 29288829 ~ 29304804 (-) True AMCG00017935
AMCG00017932 mRNA upstream 33915 29307083 ~ 29332479 (-) True AMCG00017932
AMCG00017934 mRNA upstream 81871 29355039 ~ 29365548 (-) True AMCG00017934
AMCG00017938 mRNA upstream 252267 29525435 ~ 29527497 (-) True AMCG00017938
TU117465 other downstream 393312 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1124646 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3159161 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3161430 26104026 ~ 26107805 (-) True G93795
TU116981 other downstream 3253743 26012661 ~ 26015492 (-) False AMCG00017866
TU117930 other upstream 1354820 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2989608 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2998526 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 3020852 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 3181917 32455085 ~ 32456410 (-) True G94835

Expression Profile