RNA id: TU117556


Basic Information

Item Value
RNA id TU117556
length 541
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G94246
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29286207 ~ 29286747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNatatatatgaaattaatacTTATAGAAATAAAACCTCTAAAGAGATTCCTGTGCAACACTTTATTTTGACAATAAAGCAACTACTGTTTATCGTTCTCCAATTGTTAAAGAATAATCAATAATCATTTCTGTTAGAAGCATGTCAGTAGGATTCTATCAcgatattaatacaatttaattggTCTATAACTATAGGATACTGTGAACATATTCATCACACTCAGGACCATGGGTAGAGATTCATTCCTTTCTATCTTTTCACagatttgtttgcatgtttacctgttcatattttgtcagttttgtGAAAGCCCGATCAAAACCATCAATGTCTGAGTTCAGCCCCTCCGATCCACAGAGACGGGTCACATGTCGGTATAAACTCACAAGTCTGCCGTTGTCTTCTGTCTGTGTGGTGTTGCTAGAACTGCAATAATGATCTGACTGCTTCCAGcatccttttttttctgattgtaaaatatatttaatgtattgaatcCCTTGGACAaatatgagaaataaatattttgagtgttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117522 lncRNA downstream 78403 29207470 ~ 29207804 (-) True G94218
TU117425 lncRNA downstream 550463 28733824 ~ 28735744 (-) True G94137
TU117354 lncRNA downstream 860964 28425032 ~ 28425243 (-) True G94074
TU117353 lncRNA downstream 865945 28419916 ~ 28420262 (-) True G94073
TU117336 lncRNA downstream 1189049 28093468 ~ 28097158 (-) True G94060
TU117670 lncRNA upstream 625235 29911982 ~ 29914837 (-) True G94337
TU117708 lncRNA upstream 709502 29996249 ~ 29997513 (-) True G94358
TU117710 lncRNA upstream 711607 29998354 ~ 30002282 (-) False G94359
TU117711 lncRNA upstream 711607 29998354 ~ 30002282 (-) True G94359
TU117712 lncRNA upstream 713126 29999873 ~ 30002282 (-) False G94359
AMCG00017933 mRNA downstream 2376 29274894 ~ 29283831 (-) True AMCG00017933
AMCG00017930 mRNA downstream 12923 29273051 ~ 29273284 (-) True AMCG00017930
AMCG00017929 mRNA downstream 13275 29269281 ~ 29272932 (-) True AMCG00017929
AMCG00017928 mRNA downstream 22674 29258505 ~ 29263533 (-) True AMCG00017928
AMCG00017926 mRNA downstream 168565 29100508 ~ 29117642 (-) True AMCG00017926
AMCG00017935 mRNA upstream 2082 29288829 ~ 29304804 (-) True AMCG00017935
AMCG00017932 mRNA upstream 20336 29307083 ~ 29332479 (-) True AMCG00017932
AMCG00017934 mRNA upstream 68292 29355039 ~ 29365548 (-) True AMCG00017934
AMCG00017938 mRNA upstream 238688 29525435 ~ 29527497 (-) True AMCG00017938
AMCG00017937 mRNA upstream 251408 29538155 ~ 29544905 (-) True AMCG00017937
TU117547 other downstream 13039 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 410284 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 1141618 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 3176133 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 3178402 26104026 ~ 26107805 (-) True G93795
TU117930 other upstream 1341241 30627988 ~ 30658493 (-) True G94543
TU118224 other upstream 2976029 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 2984947 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 3007273 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 3168338 32455085 ~ 32456410 (-) True G94835

Expression Profile