RNA id: TU117566


Basic Information

Item Value
RNA id TU117566
length 3725
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G94255
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29307100 ~ 29310853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTTATTGTTTAAGAATATGAGGTTGCAGTTCTACACATCGCTGCTCAGCAGACACTTGATACAGACACTTGAAAAGGTTTGTACGTTTCAAAATGTGATCTACAGACAGCAGGCACTGTTAGGCAGCTGCAGTGGACACAGATGTAGACTCTGCTTGTagaaaaaagcaacagattcaacctgaagaaaaaaaaaaaaaaaaaactaaaacagtacAGGTCttcacataaacaaacagtCAAATCTTAGGTACCACggagaaaataatatttatatatattttataggaCATATACAATTTATACCAGTTTTcagataacaaaaacacaaatcttttACATATTGAAGAGAATGGAAGTATAAACAGATGAACAATTAATGCGAAGGATGTGATTGGACGACGCAGATTGCAGTGGATGATGAGAAAGAGCTGAGGTTTGAGAGTTTGAGTTCACAGTGACCTCTAGTGGCAGCTGAGAGAAACGGAGGTCTGACCAGCAGTCCCAGAGCGcagatttaaaaatcattaacaaCGAGATTTCTTCAAAGCTTTAAAGACAATCCCCACTCTTATATTCGCACTTCTAACTTAGGGAGggggaattattattatcattattattatataaatgcacCTCTTCAGCTGACCACCCAAtcagtctttaaaaataacaattacaatatttaaccACAGTCCAAAACTCCACTGTTTCATTACGAATCTACTCAGGCTTTTATTGTGGTCATTTATGATCTTCAGCAGTATAAGAAAACTAAATGCTAAAGACACAACCTTCCTTCGTCCAACGCCTGTAAAGGAAGCCTCTACTTAAAGCTTGTGGCACCGCAACGCAAAGTGGACACATGACTCGGACTTCCTCTCCGGAGGAATTGTTCATAAAcattaatcataatttaaaaaaaaacaagaatggaAAACATGGAGAGTTTGGTTCTCTTTGTCCTGCATTATAAGGCTTACATGTttactaaattatttttatacagataaaactaaaacaaaaatgtgcacagtaatatatgaattaatagTAAAATAGAGTTCAACGTTTAAATGGTCTAGCTGCTCCTCAGAAAAGCTCCACCAAGGGGAGACATTTCTCTCGGATGAAATTAAGAGTAATCTCTCCTGTTGTCAGGAAAGTGTGCGTTTTAACAAGaggaatgtaaaaataaatggttttcaGTGCCGTCTTCATACAGAGGATAGGGGTGGAAGGCAGCTTCACACTGCCTCacataaataacagaatatattatatttaagtttatatatatgttcaaaatCTTGGTTTATGCTCAGGATTAATTTATTCgcataacaacaaaaatatttctcCCACTGAAAGTGAATAGTTGATCTCAgtaacatgttttaatacattatataattgtatctcACTATAAAGATagactggaaaaaaatactatttaactATTTACATTTGGAGACATTGCGTGTTAAATTaagaggtttttgttttctttatggttGACGTTACAAAAATATTAGTTTGTGACGCATGGTACCGATCAGGGTGTGTTTCAAGTTATTTCCTGCAACCTTAAGACACCCTAACGTCACCACTCACAGATTTAAGATTAcctttatatatacagaaaaggATAGAACGATAAAAGGTgataagaacaaacaaaactagaCTTTGAAGACGAGTTATTTAAAGATTTCTGTTCTCCCCGGCAGTAGCTGTgaggagctgtgtgtgtggtcttctcctttatttgcttatttgggaacttatttttaaatatcaatatctCAGTGAAGGGGAGAGGACACTTCTCTGGATGTAGTGTTTGTGGATTCACAATGGGACATTCTTTGGCAGGAACATCACAGTGTCTATCTTATTTACTCGTCCCCTTGCTTCACGGCTATTGCACAGAGAGGAGATGACACTAAAACCCCATACAGGACTGCAAAATGGCTTCATTGGTAGTTTAAAGATTTAggatcgtgtgtgtgtgtgtgtaaatactcCCACACACAAACCATTGCAATTACAAAATACGGACATCTCTCTGGCAGTCACTAGTGACCATCTTTTAATAACTCACCCAGGGAATATAGTGTGCAATACTGAAAATCCACTGCGACACACGGCAGTGCGTCACGCCCTCTGAGAAAAGGAAACGACACAGTAACTTCATATTAGGAACAGGTATCACGTCGAACGCAGCAGGGATTATTGCACTGTTGCCTTGGATTATTCCGATGTATGACAAAGCGAAAGCATGGTGAGGTTTTATGAGACGCACAAGATGATGGAAGACTCACTAcagtccaaacacacacacacacttatttgaTCAAGTATAAAAACAGGAAGATACATTCAAGTTGGTGACGTCTATTGGAATCAACAGAAACTCTAGATGTGCCCCTttgatggaaaaacaacaacacaactgcTCGTATTTCTGTCACTGAACACCTCGCAGTTGGGAGTCCAAGAGGTAGAACGTCCCACAGAGGTGGATGTCAACATGTAATGAAAGAACACTGACCAACACACAATGTTTAAGTTGTTAACTGGCAGATGTGTTAAAAAGTGTGCCAGGTAGAGCtcagatgtttaaaaataaaaaaactgtgtaAATATCAATGCCTTTTCGAATGAAGGGCCTGCGTCTTCGATCACGATCTATGTGCCTTTACTAACCCTTCCCAGCTTTTAAAACCCGGCTCGTCCTGCAGGTACGGGTGGGAAGAGAGGGACTATAAAGACCATCAGCCAATAGTAGTCAATAACCATGGAGGACCTACAGTGACCAGGATGGGCATGAATGGAAGAAATAATTGTAAGTAGCACTTGTCTATTAACCTGCATTCATACTGCAGGTCAAAGGCACAACTActaattgattttatattctAAACAAATGACAGctctgttttttaaaaggagAAAGTGATCCGCAGTCAGTCTCTGACCAAACACAACGCCTCTCCCACGACACCAACCAGCTCTCTGTTCACAGGCACTTTGAAACTGGGGTTCACCTTACCGTCCCAGCATCCTCCACTTCCGATTAATAACGGAAAAGCCGTGACAGTattgtgtgttgctgttgttgtttggaGCGGTTGTGCCTAGCGTTGTGCAACATGATGTAGCTGTGTTAGGAACGCGACGCTGTTGACCGGTCAGCAGCCGTGCGTCCGCAGTCTCGCTGTGCGTTCGTGAAATGCTTGTGTTGGACTGAAGGCCCGAGCGaactctcctcttcctccattTCCGTTTACTGCTTCTATTCCGGACAGaacaggaattaaaaataaaaatgtacaggtataaaaacaaaccaacaaaaccgGAGTAAAGGCTGGGGCAAGGGGACAGTTTAGGACAGGTCTGTTTGTTCACTCCTGGAGGGATGCTTTGTTTGCCACAGAAAGCTCCTAAGGGGTGGTGGCCGGGGAGCCCTTGAGGCTGTTGAGAGCCGCGTGGATCCGGAAGTGCAGCCTGGACTCCATCGAGTAGTCCTTGTAGTTCAGTCTGCAATGACAGCAACAAGAGATAAACAACTTCCCCTCCCCGTATCCTGAATTTGAAAGTGATAGGGGCCGAATAGGCCTTGTGGGAACCAGGGCACCCCTAGTAATCTCTTTGCCCACCGTGACCGACTGCCCCAATCATGGTGTCCCTTTTCCTGTGCGTGGAGCCCGGAAACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117555 lncRNA upstream 20355 29286193 ~ 29286745 (+) True G94245
TU117545 lncRNA upstream 33089 29273747 ~ 29274011 (+) True G94236
TU117487 lncRNA upstream 265156 29040010 ~ 29041944 (+) True G94189
TU117385 lncRNA upstream 654806 28651148 ~ 28652294 (+) True G94104
TU117345 lncRNA upstream 862175 28442766 ~ 28444925 (+) True G94069
TU117571 lncRNA downstream 11719 29322572 ~ 29323345 (+) True G94260
TU117630 lncRNA downstream 266303 29577156 ~ 29577403 (+) True G94308
TU117632 lncRNA downstream 339937 29650790 ~ 29651074 (+) True G94310
TU117684 lncRNA downstream 667300 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 1228115 30538968 ~ 30544554 (+) True G94505
AMCG00017927 mRNA upstream 49393 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017921 mRNA upstream 246376 29056616 ~ 29060724 (+) True AMCG00017921
AMCG00017923 mRNA upstream 251573 29051154 ~ 29055527 (+) True AMCG00017923
AMCG00017922 mRNA upstream 277727 29026015 ~ 29029373 (+) True AMCG00017922
AMCG00017919 mRNA upstream 340222 28955480 ~ 28966878 (+) True AMCG00017919
AMCG00017931 mRNA downstream 31342 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017936 mRNA downstream 57918 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017940 mRNA downstream 430081 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017941 mRNA downstream 446701 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017942 mRNA downstream 495787 29806640 ~ 29833363 (+) True AMCG00017942
TU117380 other upstream 663117 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 4591479 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8485153 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8491554 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9778807 19444172 ~ 19528293 (+) True AMCG00017712
TU117593 other downstream 122559 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 3096576 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3150445 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3196837 32507690 ~ 32601449 (+) True G94857

Expression Profile