RNA id: TU117571



Basic Information


Item Value
RNA id TU117571
length 640
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G94260
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29322572 ~ 29323345 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TAGGAACTTGCTGAGGTGTGGAGTGTGAAATAGCATACATGTCACTTTCAGGATCTTATTACAACTGAAATAAACTCCACTTCTGCCTGGGAAGTTCACTCATTCGCCCTGGGCTtcagcacacacactctctcacaccgGTGAGCCGGGGACCGCCGCGGTTAGAGGCAGGTCTGAACGCGCTTCGCCAGTGCGGTAGTCAAGACTATGGCCGGGACTCCAAGGCACAGAAGAGCGTCGATCGACAGGAGCAACACATGCAGGAGGGAGGAAGTGCAGGGTCTGCTCCCCTGTTGCAGCTGCAGCCTGACCGAAGCCCAGGCAGGCAGGAGGTCCTGGAGACAGAGGCACTGAAAGACACCGGAGACTTTCCTTCGTGCTGTGAAGTGGCGAAGGCAGCGACCCCTTGGTAACGCGACGCACTGGGAAGAGAAGCATCTCTTGTGTGCGAGACGCTGGCATTTTTACTCCAGTGTTAGTTTCTTTGTTCTGGAGATTTCTGATTTATTCAACTGAACTTTTTCTGCActaatgattaaaatacaacatattacTTGTGTGTTGATTAACTATGTGTCCAGCAGATTGTGCTTTTGTGCACAAACCATTGCACTGCATTGCTCTTGGAGATTTGAGGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117566 lncRNA upstream 11719 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 35827 29286193 ~ 29286745 (+) True G94245
TU117545 lncRNA upstream 48561 29273747 ~ 29274011 (+) True G94236
TU117487 lncRNA upstream 280628 29040010 ~ 29041944 (+) True G94189
TU117385 lncRNA upstream 670278 28651148 ~ 28652294 (+) True G94104
TU117630 lncRNA downstream 253811 29577156 ~ 29577403 (+) True G94308
TU117632 lncRNA downstream 327445 29650790 ~ 29651074 (+) True G94310
TU117684 lncRNA downstream 654808 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 1215623 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 1262365 30585710 ~ 30591176 (+) True G94522
AMCG00017927 mRNA upstream 64865 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017921 mRNA upstream 261848 29056616 ~ 29060724 (+) True AMCG00017921
AMCG00017923 mRNA upstream 267045 29051154 ~ 29055527 (+) True AMCG00017923
AMCG00017922 mRNA upstream 293199 29026015 ~ 29029373 (+) True AMCG00017922
AMCG00017919 mRNA upstream 355694 28955480 ~ 28966878 (+) True AMCG00017919
AMCG00017931 mRNA downstream 18850 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017936 mRNA downstream 45426 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017940 mRNA downstream 417589 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017941 mRNA downstream 434209 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017942 mRNA downstream 483295 29806640 ~ 29833363 (+) True AMCG00017942
TU117380 other upstream 678589 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 4606951 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8500625 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8507026 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9794279 19444172 ~ 19528293 (+) True AMCG00017712
TU117593 other downstream 110067 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 3084084 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3137953 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3184345 32507690 ~ 32601449 (+) True G94857

Expression Profile