RNA id: TU117593


Basic Information

Item Value
RNA id TU117593
length 2106
RNA type TUCP
GC content 0.48
exon number 2
gene id G94275
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29433412 ~ 29450347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGCTTCATCTCCAGCTTCGTGGACCTGTACCAGCTGGCCTGCTCCAAGATGGCCCAGCTGGAGAGCGAAGTGTCCTCACACCGGAGCCACATCACTGCGCTGAAAGCCGAGCTGCAGAGCGCGTGCCTGCGGGAGAACCAGGAGGACCTCTTCCCCATATCTGGAGCCACAGTGGGCGTCTCTTCAACTTCACCACCGAACACCTCACCCCAGCCCGGAGCAGACGCCTGGAGCGAGGCAGGAAACAGCCGGCCGGGCGGCCACAGCGCCGCGAACTTCGGCCCCCTGAGGGTGTccagaggaggagagaagacTTGGCAGAGCGGCCCCCTGTCCTCCGGCGCCAGAGCTGCTTTCACATCATCCACCACAATTACTaattaacaacagcaacaacaccgAGAGGACACACCATTAAAACGAGCATCTGAAATGATTTGTAGTTTTATACCAGGCAAACGTTATTTATAATATGAgtagattttatatttatatttttatatatacccTCTACATTTGACAAAAGAAGGTAAAAATGAGAGacatctttgtgtttttaaaaacatctatttgtatttgatgCTGATTATGcattccccccctcctcccaatTGTTTAAAAAGTGACACATTTTAGGTAATTTTCCAccaaccttaaaaaaaaaaaaatcaataagcCATTTTAGTCTCTATCTATCAAAGTTGTTTCATACTTGTCTGTTGTAAAGCGGGAATGCAGCACTTTAATAGGATCGCGGGagctatttgaaatgtatgccaATGATTCCTGTCATTTCATGGCAGCCCTGCCATGGTTCACTGAGCCCCACTGCTCTCTTGTCAGCCCGACTGGAGACGAGCATTTAGTTGCAAACTTTGAACAGGTTgtgcaaaacagaaatgatgTGACTGCTACCCCTCCTGCACCGCAATGTCACTCCTGGTCAGAGTGAGAAGGTCGGGCTGCGGCTCGTCTCGCTACACGGGAAACGCGCGCCCTTCTGAGCGCGGTCACCGCCGCGCCGCCGCTGTGTAGAGacgctctctctcccttcctcctgagcggtgtgtgtgtgcgcgtcgAGGGAGGGGGTTAAATTATAAACCTGCTGTTCATGAACTTCACAAAGACAGTGTCTCGTCCTTCCTCACCTCCCTGCAGCATCCAGATCATTTCTCTTTCCTTTGTGcgtttattttaatgatcatTATTTCGATTACAGTCTGATCCTTTCAGTCTCCCCCGTACGAGGGTCTAGGTAGGCTCCCTTTGTCTGTGGTACCCCAAGAGTGACGCCCATGTTTGACAGCCTACACATCAAGGCCATTGCCCTGTATTTTCTGCCTTGTAGCACACAAAAGTAAAATCGCTTGTCAGGCCGAGGTGTCGAGGAGCTGACAAGATGCCCCAGTGACATTTCAGCTCGAAAGAGCAAGTGTCTTGCAACCGAGTGgtcaaatatcaaataatagGTCAAGCAGGAAGGAGTTGAGTGGTATCCAGAAGGCAGTTTCTGGCAACTTACTTGACAAGCGCCCGGGCGCTCTGCGACTTAACAAAGTGATGTTCTGTTGGGTATTGTGAGACAGTCTGTTCCGTATTGCCTTCAAAAGATCAGACATTGACATTGATTAATCTCTTTAACCCCTTGAGCATGGAGACGGGGGTTTGCGGCGCGCCTGCCGGCAGGGCGAGTTCACCGGCTCTGTACGTAGAGCAGCACAGAGATATTCCACAGCTCATTAGAATATGCTGACCCCATCATCCTTGCAGTCACAGTGCATTCAGCACGGCAAGTTATTTGACTGTAAAACATAGATTCTTTCGCCCCGCGGTTCACACTGAATGCTCAAAACCTCCGTCTCCGAGGAGCTATTTTGCATTCGGAGGAATATTAATTTACAGAAACTGAGAAAATTAGATAAAGGGTTTTCTACGGCTGCAATTAGGGAAAAGGCAATTAGATcatctgtttgcttgtttttttctttattgtccTACAAAttaagcatgtttttattttttatttgctgtgcTCGTAAATATAGGGTCtccatttattaatgtaaattattttctcatgtgTAAATATAGGCTTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117571 lncRNA upstream 110067 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 122559 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 146667 29286193 ~ 29286745 (+) True G94245
TU117545 lncRNA upstream 159401 29273747 ~ 29274011 (+) True G94236
TU117487 lncRNA upstream 391468 29040010 ~ 29041944 (+) True G94189
TU117630 lncRNA downstream 126809 29577156 ~ 29577403 (+) True G94308
TU117632 lncRNA downstream 200443 29650790 ~ 29651074 (+) True G94310
TU117684 lncRNA downstream 527806 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 1088621 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 1135363 30585710 ~ 30591176 (+) True G94522
AMCG00017936 mRNA upstream 16599 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017931 mRNA upstream 79525 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017927 mRNA upstream 175705 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017921 mRNA upstream 372688 29056616 ~ 29060724 (+) True AMCG00017921
AMCG00017923 mRNA upstream 377885 29051154 ~ 29055527 (+) True AMCG00017923
AMCG00017940 mRNA downstream 290587 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017941 mRNA downstream 307207 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017942 mRNA downstream 356293 29806640 ~ 29833363 (+) True AMCG00017942
AMCG00017943 mRNA downstream 452468 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017946 mRNA downstream 503120 29953467 ~ 29954534 (+) True AMCG00017946
TU117380 other upstream 789429 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 4717791 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8611465 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8617866 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 9905119 19444172 ~ 19528293 (+) True AMCG00017712
TU118260 other downstream 2957082 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 3010951 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 3057343 32507690 ~ 32601449 (+) True G94857

Expression Profile