RNA id: TU117632


Basic Information

Item Value
RNA id TU117632
length 285
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G94310
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29650790 ~ 29651074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGGGACATTCTGAAGAGGAGGTTGCTGTCACTGTTCTGCCATGTCCCCATGAAGCCGGGCTCAGCACTGGCCGACCTGGCGCCGAACTGCATGGAGTTATCACTGGCCGTGTCTCTCAGAGTGGAGTCTTGtgccctctctcgctctctgtctctcggcgtgtctctgtctctcacatcCACTTCTGCCTCTTCTGACTGAAAAGTGAAGGTGGATTTgggttggattttttttttcttgctctttctcttttttttttctcagagagagagagagagaga

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117630 lncRNA upstream 73387 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 327445 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 339937 29307100 ~ 29310853 (+) True G94255
TU117555 lncRNA upstream 364045 29286193 ~ 29286745 (+) True G94245
TU117545 lncRNA upstream 376779 29273747 ~ 29274011 (+) True G94236
TU117684 lncRNA downstream 327079 29978153 ~ 29980642 (+) True G94348
TU117880 lncRNA downstream 887894 30538968 ~ 30544554 (+) True G94505
TU117900 lncRNA downstream 934636 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 1067104 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 1176368 30827442 ~ 30831863 (+) True AMCG00017978
AMCG00017936 mRNA upstream 233977 29368771 ~ 29416813 (+) True AMCG00017936
AMCG00017931 mRNA upstream 296903 29342195 ~ 29353887 (+) True AMCG00017931
AMCG00017927 mRNA upstream 393083 29250387 ~ 29257707 (+) True AMCG00017927
AMCG00017921 mRNA upstream 590066 29056616 ~ 29060724 (+) True AMCG00017921
AMCG00017923 mRNA upstream 595263 29051154 ~ 29055527 (+) True AMCG00017923
AMCG00017940 mRNA downstream 89860 29740934 ~ 29756915 (+) True AMCG00017940
AMCG00017941 mRNA downstream 106480 29757554 ~ 29764700 (+) True AMCG00017941
AMCG00017942 mRNA downstream 155566 29806640 ~ 29833363 (+) True AMCG00017942
AMCG00017943 mRNA downstream 251741 29902815 ~ 29912178 (+) True AMCG00017943
AMCG00017946 mRNA downstream 302393 29953467 ~ 29954534 (+) True AMCG00017946
TU117593 other upstream 200443 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1006807 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 4935169 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 8828843 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 8835244 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 2756355 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 2810224 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 2856616 32507690 ~ 32601449 (+) True G94857

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000555 False 4621 mRNA 0.46 6 NC_007112.7 27112479 ~ 27209089 (+)