RNA id: TU117880


Basic Information

Item Value
RNA id TU117880
length 5562
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G94505
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30538968 ~ 30544554 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAAGTCCACTTATATATTTCCTCTTGTTGTTGGACACATAGCTTtgttgtgttatatatattttaacattcatGTTACACATAAAATGTACACTTAGATGCatccataaaacaaaataatattacagtcaGTGCAATTGGATTTACAGTTCAAAcggaaataacaaaaaaaaaaaaaacattacaaaaaacatttttccccaaaatatacatatttgttcaaaCAACGAACTTGGATAATGTGTCAGTAAATTACAGAATACACCAAGATACTGACCATCAGAAAAATGAGTTTTTACATAAGCAATAAGAGCAGCATACCTCAACTGGGAGACATAAGCTCACAGCGGTCTAAAACTTGAACCTCAATATCTATTACGTACACCAGCAGAACCATGTGTGAAAGGAACAACAAGTATACATAGATATATTGTACGTACAgatatattactatattatatGCATTTACGAGGCACTGAGTGGAATAAAAGCCCACTTACGTCACAACAACGCACGTTTTAAGCGGAGAGACATCCTCCGGTGCTAAATCACTCTTACTGTAACGGGACTGCTGCACAACAGCTGCACATAACATTTAGCGACGACCGACAACAACAGTACCTTACAGAGTCCAGACGTAAACCCCCGCACAGCTGTACAATCCAGTAAAGGGCGAAATGAAAGTGTAAAGGTACTGGTCTGTGAGGCTAAAATGTCCAATGGAAGTAAATCGATTGCACTTCCCACATCTTCAAGTTCACTGAGGCCCAGGAAACCAAGTCAAGTCACGGGGTGCCTAGAAATGTGTTCTGGGAACGCACGCACTTCCAGACAGGTCCAATGATGAATATAATTGTGAATGTCTTCAAGGCTGAACATGACCTAGTCTTCCCTCCACTCTTTGGCAcggcaaaattaaaaaaatatatatatttaaactcatATTGTGATGGATTGTCCAATTTAGCAACCCTTACATTGATACGATGTGAATAAACTACTTCTGGGAGATATTCCAGAGCCATTGTGGCTCAAGTTACAGTATTTGACCTCTGCAATGCTATGAACTCTGAGATTTTGCTCATAACAGGAACCACAGTCCACCAGTCACCGTTGGACAGCAACCCAGTGTGGCCGTGGAGAGTCCGACAGAGAAGAACCGCCTTCAAGTAGTACAGAACTGCAATATGTTAAAGAGGTCATAAACTACCAAACTGCCTCTTTGGTCTAGTCTAcctcaacatttttatttctactCCCCTCTTGAGTTTCACTAGATGAcaaaatgataatgatgaaGTTCAGGGATGTGGTGTCAAAGAAAGTTAAATTGgactataaaaacatatatatatggttcagtaaaagcaaaataaacaaagctttGCTCCTTTGGCACGGAACAACATCCCACTCGCCTTATACACGGATACCTTTCTTTTACTCCTTGTTTTGAGGCAACCTTCTTAGTGTCATATCtgacagagaaataaaaatctttGGGGTCTACAAACTTATTATACGTGATCTGCTAGCAGAGGTAGATAGGTAATGAGTgacactgtacattttaaatgctttgccTCACTTAACCACTGAACAACAAGGCCAAAACAAGCTTCACATCCAAAGCAGATCTTTCTAAACTATACATTATATGCAGGAGAAGTCAACCGACTCCCAAAAGAAGAAATGTGGATTTTGAACCTGCCTGTTTCCCCTACCTCATGTTCAGAACGAGTCTTACTCGTAATTCTGGTATACATGGTGTTCACTCGTGATTCATTATACTGAACCGTGGGCAAGTCATTAGAGCTTTACAAAAGATGGGCTGCACACAGATGACTCTGGAGCCTTTATATCACGTTTTGTCAGTGGAGCACCCAGGAAAAGAATAAAGAGCAAGGGTATTCCTCAACCTCAAGCCCTTTTTACCAGACCAAAATGGAGAAAGATCCATGCCAATATGTGGTGCTCTCTCTTGAGCAGGACGTTGATGATGCGTTCGAGTATGGCCCATCTTTTATAAAACTACTCCCCAGGGCACAGGTGGAGcgacattaaacattaaacgtGTCAGACCTCACATCTTAACCAAGACTCTTTGAAAGTACTATAGCTGTCTTTCTATCTGTGGACAGTCATGTTAAGACAATCACTGGCAAGAATGGCACTGACTGGGAATGATCTAATCAACTTTTACAGTGATATAAAGCACTGATTCAACAGTCTTTACAGgacataaaacacacatgtaaacattTCTCTTTAACAGCGTGTTTACACGGttcacaaaacaacacagtgGTAGACTGATTTCAAACACTGTTATATTGTCGATCGTGAAAGCAGCTTAGAAGAACAAGCAACTGTGATGTAATCCTCCAAAAGCAGAACGTTTCAGCACTGGGCCATGACTTGTGATGAAACTTGTGACGTTTAATACTATATCAAGTATGAATTGCATGGCACCACTGTTTTCagctttttgtatttcttctttcacaGACGAAGGCAGATGAGGCCAAAACAAACCTTCCTACAGTGCTTTGAGGCGAAAGTCATTCATAACTCACAGATTGCCTGTCCTTGTACTCTGAACTCCGTCAGAGCACCCTGCACAAGCAGTGACCACACACAGCTCACTGTACTTGAAGGCCAGATCTCTAACCAGGAACAATACGATCTGTCATCGTCCTGCCATTCACATAAAAACAGAACGGTTTACAAAGGCGACTCGGAACAGAAAAGGCATCAGAACCACGCTGCAATCCTAGTTAGGGAAGGACTGATGATACAGCACATTATTTCTGTAGCCTTTGTGTGGGCATGCACAGCGCCgccttgtttttaaaagcagcaaCTCCAATGTTGCTTTATTCCCCCGGGTCCACAGAAACCTCCTTGTCTGTGTTCTGCCACACTAGAATACTGTGCCCAATCTGGGAAAATCATTATAGACTTCACAGGCATTTATTTTAGAACCTGAAATCTGCATTCAAACCCACCCTTAAAATGGCATTCGCTTGGAAAGGACAGATTTGGAATACTCATAAAGGACCTTCAAATGTTCTTGCATTTTTACAGtaaacaattttgtattttttcataaaagTGTCATGTCAATTTTAAGGCTAAACTAATTAGTAGAAccataaattacatttgcaatactATTCCAGATCCTCCCACATCCCTTGGTTACACAGTCCTTAATGCACTATTGAAAGGCACTAGCATTCTTCTTCGATTTATTTGCCCAGATAAAGAGGACCTAAAGgatatttgaaatgtgtgttttgtcatCAGCACATGGGCAAACTTGATCACTGCGGACAGTCACCCTCTCAGTCAGAGTCAATGGTCAGTGTTGTACAACCTACAATGGACAATGGCACACACTCCACTGTCTGGAGAATAACAGTAGTTACAGATGTTTCATGAgaaagaaaccaaaccaaatataACCCAGTTCTTCCACAGTGTCTCTGATGTTTCTGCCAAAGACGACGCTCATGGCCAGTGTGCTGGTCTTGAGTCACACAGCGGACCTGCTGCAGGTCTCAGTAAAAGAATCTCAACAGCTAAACTAGTCATCCCTCCCGGCCCCCAGCCACCTCTTTAACCCGTCTCCTCTGCCTAAGCCTTGCTGCATTCAGAGGAAAGATATGCACTAATCTGACTGTCACTGgcttgagaaaaataaaaaattagtCGTTCACAACAACAGCATCAACACAGAAGAGCACGAGAACAGTAAACAATCTTCTCAACTTGGTCCGAAAGCTCTGCAAAAACAGATATGTTTTCAAAGGACGGTCCGGTCCCTTAAGTGTGATAAAAGTTGCTTTTAAGAACTGGACTCTAGCGATGCTGCTGAGGAGCGCAGCCGACAACAGACCAAAGACTTATTTCTAAAATTTGCAGTTTTgttaaaacaagttaaaaaaaataataaaacacaggttCACATAGTGGACAGTCTGGTGTACAATTTCAGTAATGTATGACGATCTATTTCTCCTCATTTCCCAGAACACCGACATACTGGTCGTGTGCTTGTACTGTGGCAACCTGACAAAGGGCACCATACAAGAATAAAAATGGAAGGATTGCTTTTCACTCCCCTGCCAGGTTCATAACATTAGAATGGGGCTGGGAGGACCATTAATGGTTTCTTATTTAAGTGATGATGAGACCGACAGACAGCTTTACATTCCTGAAGCTGCGTCACCGGTGCAGGTGTGCGAGCGAACAGCAGGGATACTTTGTGGAGAGCAAATTGCAGTAAAATGTTAGACAAATGTGTAATGTTGCCATTTCTTTAAGAAGGTAAATAAGTTTCCTTCTGAATTACGTTCATTCAGAAAATTCAGTTAATCATTTCAGTCAGATCGATGGCCGACAGTTGTGGCCGCCAGTGTGTGTTCATATAGTGTGTTTAATACAGTGTATATTTACAACAACTGGGCTTTGTTAAAGTATTTCCTTTGCCTTCAGTCACTGTCTGGTATTTCAAATCTAGTActtaacacttttattttcttggacTTCCAGGTCTATAAAAGATCCTTTCCCAAGTCTAGTCATTGTAAAGCAGTTCACTAGGATTTGCTAGTAGTCAGTGTAAATCTATCGCCACTAGATTACTAGCAAACCACACCAGCaaagatttgtatgtatttttttaattagggagattacattttcattactaGTAACTGGTTTCCCTTAAATGGAGAGCTTTTGAGATGACCGATCACTTTTTGCTATGAGTAAAGCATTCAGAGAATAACAGAAAATTCCAGCACATCCTTGGGCTGAACCCAGTTCTCAAACAGTGATGCAGATGTATCTGAGATCCCTCAGCACTACAGTGTTGTCTGTACAGATGCAAGTGGCTGTGTGACAAGACTGACGTTCTCAAAGACTCTGCTTTAGTGCTGTGAGAAGCTAGTCTGGGACGGCCCCAGTCCTGACTGACCAAGGATCAAGTAACGCACATGAGTCGGACAGATTTTCCTAAGCCACTCTAATACCGAAGAAATCAACCTAGGAACGAGTTACATCTAAGTCAACATGAAAGCACACAGGAGCACTGCAATCCAATGACAAGACTATGAGGTTTCAGTTGCTTGTGGGAGGTCAACTTCAAGTATATTACAAGCTAAAAACATGTCGAATATGAAGGTTTCATTAATAAACAGACACTGTCACCAAATTGATGATCATAGCACAATGGGAAAAACCCCCAAAGTAAAACGatcaacaagaacaaaaacactgcaaatgGAACCCTTAGTGGCGATGTTCTAGAACGACTACATTCAGGAGTAGTAGAATGAGCGGTTGAAGGAGGACAGAGATGCGGGATCCTCCAACTGTTCAAGCTTACGTGTGCCATGTTTGTGAGTGCCGTGTGATTCACAGCTGGCAGGCTGGTCTACTGTCCTCCCAGCAGTGGGGCCTCTTGTTAATCTCAGTGCCCCCCCTCGCTGGCTGACAAGCTGTCTGTTCTCGTCTCTTTCAAACTCCCCGAATGTTTCTTCTGCTTGGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117684 lncRNA upstream 558326 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 887894 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 961565 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 1215623 29322572 ~ 29323345 (+) True G94260
TU117566 lncRNA upstream 1228115 29307100 ~ 29310853 (+) True G94255
TU117900 lncRNA downstream 41156 30585710 ~ 30591176 (+) True G94522
TU117945 lncRNA downstream 173624 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 282888 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 779970 31324524 ~ 31340832 (+) True G94583
TU117984 lncRNA downstream 850592 31395146 ~ 31395366 (+) True G94591
AMCG00017964 mRNA upstream 1504 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017960 mRNA upstream 51684 30462864 ~ 30487284 (+) True AMCG00017960
AMCG00017961 mRNA upstream 79346 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017959 mRNA upstream 109345 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017962 mRNA upstream 127480 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017970 mRNA downstream 52442 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017969 mRNA downstream 66496 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017968 mRNA downstream 76269 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017973 mRNA downstream 111579 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017978 mRNA downstream 275315 30819869 ~ 30831867 (+) False AMCG00017978
TU117593 other upstream 1088621 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1894985 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5823347 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9717021 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9723422 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1862875 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1916744 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1963136 32507690 ~ 32601449 (+) True G94857

Expression Profile