RNA id: TU117900


Basic Information

Item Value
RNA id TU117900
length 4993
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G94522
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30585710 ~ 30591176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacattcttgagttttattttagtaaattgtACTGTGACTTTTCCTTTGTATTCTCACTGAGGCAGTTCACTAAACAAGCCTTTCAGTAACTAAATAGAAACAGGCACACTTGAGCATCATAAAAATAAGtttcataatacattatttacttcAGTTTAGTCAAGATACAATTCTTATATATTGGGAGACTTCATCAATTTTACAAATGTGCACTGGTTAATTACAGTTACcagcaatatatttaaaatgtgttaaccACGATCATCTTTACATTGTAAACTCAAAATACAGAACATGACCCGTGAGAGAGGAAGGTAATATACGCTGCGCAAATGACTGGTTTCTCGTTTCAGTTTCAGCTGGAGCATTAGAAGCTTTTTAAGAATTCGcaacataaaatgcaaaaaaaatgtcttttaaCAACtttgagaaaacacacacacccacacacgcaTAATGAAATGGGGGGGAAAGCAAGCACCGTGAATTGCATGTCTGCCTTTTAAAGATGAAGGGATTATTTGAAAAGATTGATTATAGTGGAGATATTGGCCCCATTGAGCATACACAAATATGCTTTTCAGTGGAGACATGTCAACCACAAACCTCATgacatgtacaaaaacaaacaaacaaaaacattagccGCTGCCAGCAGGAAACACACTGGTCGCAGACCcgctttactttcttttttaatctcaaatGAAGACCGTTTGGAAACCAGTCTTATTTCTGAAAAGGggttccctctctctttttttaatcaacaggACAGgttataaaggaaaataatacagCCGAGCAGGAGCAATCACAGCTTGAAATCCCCAAACTGGGATGAAAAGAGGTGCTACACAAGATGTGCACAATTCAGTGTGGACTGAAGCCAGCGAGACAGTCTGGATCCAAGACAATGTACTGTGGGACGGGTACAGTCCATATCAAATAACTCTGCCCCCATACACCTgctagaaataaaacaaaatgaaataaaagaagCATCCAGAAACCTAGCATACATCATCTTTTAAATGCCTACTGCAGATCCGAACCTATTTTTTGGGCAAATACTAATAACCAAGAACTCAAATAACGCCAAGCCGATTAGGGAATCACCAGATGTGTTCTTCACAGAAACATTCACTCCCTGCTCTTGACCCTGAGTACAATAAGAAACAAGACGTCTGAAAGTTTGCAGACACTGCCCTTCACTTGAAAACTGCCAACTGTTAGGATGCCTTCTTGTCACACAAATAATCCCACAAATTAATTAGAAGACGTTTTAGTAGTTTTAGCCTGCAGCATGTTGTTTGGGATTAGCAGAAGGGAAGACAGTGACCATCCTCATGTTTTCCTACAAACACAGGTTTCAGTCTAGTTGGTCTAGATTTGACACAGTCCCATCAGTGCAAGACTGATCATGTACATCGTGGTCCTGTACCAGATGATGTGGTTGTTGGCCATCGCTTTGCTTGTAGCACTCCTCTCAGAAACCTGATTGGGACGTGTCCTCAGGGGACAAACTTGGATGTATTTGgttgatttaaataaagcaatattgaAACTTCACCATCACGaacttaaagaaaataagttatCTTCCAGGGcatcaacacaacaacacaaaatgttttcGTCCAACCATGCAAAGACAGTTAGATACATACCGTTTTTTCACACTAATTGTACAGAGACTTGCCAATATGCCTTCAACATTCAGGGTACATGGTCTGCAATCCATTTTGTTTAATCCTGTGAAGTGCTAAAGCTTGATTAGACAAGGTTGGTTTTAAATAAACCTGTCGGTGAGGCTCTTTTGCAGTCGctctttttaaacacacaaaaatgaaagctGTGCAATGACaaccgtttttgtttttttatagtagTTGACTTGAATTTCACTATTATTGACTTAATTGCTGGTTGCAAACCTTGGTACTCTTTGTTGcatgtttcatatttgtatgtCAAAAGCACATTCCTGAGGTatattgccttttttgttgtaCCCATAGATCATAGCAATGCTgcacattatacatttcctcccctctcccctgccAAACCCACCAGCAGATCACAGACACATGCAATGGAACAGTGACGAGGAAGTGAGATAATGGGGACACAGGAGATATGTAGAATCCTTTAACCTCGCTGGGCAGGAACACAGTCGAACACCCACTGCAAAACAGCCTCCAAAGATTGACTGAGTAACGGCCACACACAGCTCCCCTCCTTCCTCTCGAAAGTACCACTGAACTGAACAGCTCTCGCTTGCCCATCATGAAGTGTTATTTTGACCTGAGCACAACACCGATGCTGTACTGAAGCAGCTGTTTTGAGGTGCTTTATTGAAGTCCAGAAGCGCtagtttaaaattattttctcagCACGATGACCTGCTAGCACCCTagtttatgtaataaaaaaaatctacatcaacCAGTATTTCCCACAGGTTTTCACCTCCCTGCATCTCCCCCCCTCAATTCCACAAGGGCAAGAGGATAATAATACATCTGATATCTCTGTCAGTATCAGCAGACAGGCTGCAGTATTAGCTCGTGTTTCTGTACCCGGCCCGGTGTGAAGGGCATTGCTGGTGTTGCCCACAGTGGCGTCTGTGTTCGTTTTGGCTCGAGGATAAACCAGGAGCATCACACTGGATCCGGACTGTGCCATGAATCAGCCGTTGAACAACAGATCAAGAAGAACCTTTTCTGCCCGGCGCTACGGCGGCACCGACGCCACTCGGGCTGAACTCGGTCCCCCGGCGTTACACCGAAGAGAGCACTATGGACAACTGAAGGATCTCAGGTCCTCCTTCTCGTCATGAACCAAGGATTCCAAATcaggaagacaaaaaaacaggaacacatGATCCTGGAAACGGTGGATTGATGAGCATCTGTCATCAGACCCAAGTTTGCAAATACGAACAGTTTATCCTTGAACCTTAACACTAGCAAACTGCAGGTCAGACATCTGGACCCTAGCTTGGTCGAACACTGGCTTCAACCCCACTGAGCATGTGTGGGCTGTCCTTGTTCAATCCCCATCATCGCAGATCCATTTCCACAGACACCGTCACACTGATGcagtttcaaaaacagactgccaccccccccccgaTCACGACAGGGATTGCTAATCTCCTGAACGATGTGTAAGCAAGGCAAGGGAGACCCCACTTGAATTCTGCCAATGCTAAGCATAGTTCCAGAATAAACACATCTTGCATTGCcttgtgtgtgtaaaacctCCTTGTGTGTCAACTTTTGAGCTGAAGATAAAAGAACCAAAATAAATGCTATGCTGACAGTGCTTCATTAAGGTCTCAGGACACTGACCCTGAAACGCCAACTCAAACATTGTataaaccaacacaaaaatCACCAGGAATCTGCGATAGTGGTTCCTGGCCAAAGACAAACTCGGAAACCGTAAAGGCATGGATGTCAAAaccagtatttaaatatttcaaataaccTTTACTGTTTCACCGTCTTCAGGGGGAGATTCACTCTTTATCGTTCATGAAAACCTTCAATTCTACAAATCCTTCATGGATAAAAATGTCTCATGGAATATAATAATCTTGGACCAGTTCatgcataagaaaaaaaacatgcaaaagacaaaaaagtaaaacagctCATGTCTGTTAAACGTTGTGTTTGTATAACAAGAACACTAGAAAACGGACAGAAGAAAGTAAAAGACTAGGATTGAATTTGCAATAGTAAACTGACtctctgtgttagtgtgtgtgtgagagccaGCCCAACCGGCAAGGACGGAGTAACTGAATTCCTGCAGAAAGCCAGAGATAAGAAAATCTGCAAGGGGCACGACCGATTAAACAAACGGTCTCTAATCTTCCTCCTTCTGGCTGTGGACATGACTGCACTGTAGTGTACAAAGAAAAAGTCTCAAAAGCTACAGAGGCAGGGATGAGGGTTCTCTGTAttctccagaaaaaaaaacaacgaatACATACACAAAGTACCACAGAAGATGGTGAACAggttgaaacaaacaaacaaacaaacaaacaaaccaaaacaatcaaaaatagCATATATTTACTGTAGACAAATACGAGTACCAGTCCGCAGCTGTACACCAGAGTTGAGTCGCAGAGATTACCGCTCTGTCCCTCTTCTGTGGGCTTAAACACTCTTTAATTAACCTTTGGGGGCGGCTCCTGGGCTCCCGGGAGGCCTCTGAAGGTAGATGATATCCTCTTGCACCTCTCTGGGAGTCAACAAATCAGATGCACGCATCTACCTCTTGCGGTGGGAGGAAttacatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgggAGGGTCGAGTAGTGGCTAGAACTTTGGCTGGTAGAGGGACACCCGTCCACTAAGGCACCCGGAGGCCAGCTGGCAGTGCGTGGGCGAGAACTTGGTGGTGAGCACCACGTCGCTGTGCGAGTAGATGGAGCGGATCTCGCGCAGGCAGCTGGACTCCTTGGGCAGGCAGTCCACCAGCTCGCTGCACTGCCCGTCGAAGGCCATCAGCCGGATGCCGTAGCCGTAGGGCGAGCAGATGAGGCGCCCGTCGGGGCTGAAGCACAGTTCCTTGATGTAGCCCCGGCCCACGTTGGCCTCCTCGATGTAGTGGGTGAGCTTCAGGGAGCAGCGGGGCGACACGGGCCGCACGGGGCCGCCCTCCTGGAACTCGTACACACACGTCCACTGCTCCTGGTCGTCCGTGTTGCTGGAGCAGCGGATGAGGGTGGCCCAGCCCTTGGGGTGCAGCTGCAGGGAGGTGATGCAGTTGCCCCGGTCCCTCTCCCCCGGGATCTCAGGGGTCAGCACCTCCAGGCTGTTTCGAGGAGACGCTCCTGAGGGGGAAGAGGTCAAAAACAAAGACGTGATGTCCCAGCTACAGTCAAGTCACGCATTGAACCGTATTTCTTGCCAGCACTGGTGTGAGTAGGCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117880 lncRNA upstream 41156 30538968 ~ 30544554 (+) True G94505
TU117684 lncRNA upstream 605068 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 934636 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 1008307 29577156 ~ 29577403 (+) True G94308
TU117571 lncRNA upstream 1262365 29322572 ~ 29323345 (+) True G94260
TU117945 lncRNA downstream 127002 30718178 ~ 30722318 (+) True G94555
TU117957 lncRNA downstream 236266 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 733348 31324524 ~ 31340832 (+) True G94583
TU117984 lncRNA downstream 803970 31395146 ~ 31395366 (+) True G94591
TU117987 lncRNA downstream 826673 31417849 ~ 31418120 (+) True G94594
AMCG00017964 mRNA upstream 48246 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017960 mRNA upstream 98426 30462864 ~ 30487284 (+) True AMCG00017960
AMCG00017961 mRNA upstream 126088 30456550 ~ 30459622 (+) True AMCG00017961
AMCG00017959 mRNA upstream 156087 30415761 ~ 30429623 (+) True AMCG00017959
AMCG00017962 mRNA upstream 174222 30401589 ~ 30411488 (+) True AMCG00017962
AMCG00017970 mRNA downstream 5820 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017969 mRNA downstream 19874 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017968 mRNA downstream 29647 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017973 mRNA downstream 64957 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017978 mRNA downstream 228693 30819869 ~ 30831867 (+) False AMCG00017978
TU117593 other upstream 1135363 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 1941727 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 5870089 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9763763 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9770164 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1816253 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1870122 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1916514 32507690 ~ 32601449 (+) True G94857

Expression Profile