RNA id: TU117930


Basic Information

Item Value
RNA id TU117930
length 2952
RNA type TUCP
GC content 0.46
exon number 2
gene id G94543
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30627988 ~ 30658493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCTCTCatccaaaaacaattaaatctgTATTAACACAGCATAAacctttatataaaaataataataataataataataataataataataataataataataataataataataataaagaggaTGTGGTTTGCTTATATTGCCCCGGTTTTATTTAACGCATTCTTCCCTGTTGCCAGACCCAATGACTCCTAAATGGTGTGCTACCGATTAAATACAGTGTCATCATGTGCTGTATCTTAACTAGACAACGAAACATATTAGTACATTTCTGTGCAAATGGGATACAGTTACTTGACAACAACAGGCAGGTAAGAAGGCTCCAGGTTGATGGTGTCCACCGTCCGCACGGTGAGCGCAGGCACACTTTATTAAAGGTCCGGTTACACTTCCTACCCCTGCAAACACCTGGGAGGGACATTGAACAAGTAAAGTGCAAATACATTCGTATAGAAATATCAATAGGATCGAGATTTCCTAAATTGCTCAGTTCATTCAttgcacatttgaaaaatacCTATACACGTTAGAAAAGCgcacaaaataattgtaaaatgatACAACACCCTCTTGGATCTCGTTTACTTTTCCCAGCAATTTGTAAATTAGGCTACTATCGACAAGGAACCAATAATCAACTGTTGGAAACGTGATGAGTCTAAATTAAGGTTGAATGTGTGTAATATGTCTTCAGTAATGCAGTATCTCCAAGGAAAGTAACAATATGCTAAAGATTTCTATTATATACACGCAGGTTGGATATGGTCAGGATAAAATGGCTGTTCGGTGATATAATCCAACAGAAGGAAACGTGGATAATTTGCGCAATAATTAAGAGGATATATGTCAGACAATTAGTCCTTGTCAATATGCTGTGCTTCTACTTTATTTACTgtttagatatagatatacattcaATTTTCCATCTATATAAGTGGTTTGCTTTGTCAAGTATTGACATTGTAAACATCTTTGGGGTTAGGTTATTAAATTGattataattgttaaatatttctCTGTTCACCACGCCAATGCTGCGTCCTGCTATCCCCTTTAATACATGCCaacctctttttcttttttctttttttacaaaaatggcATACATGATATAGGAAGGACAATAGTGAATAATTCATGTTAATTTTGATATGGATGTAATTATAGTTTTTCTGTATAATCTGGGGTAGTTACGAAGCTTGTATGTTAAAGGGAGGCAATGTCACAAACCcttcacacattcatattaacaaaataatccGATATGTGAATGTGTACAGCTGTTAATGCGAGACATGTGTAGTTCATTGCCGTACAGTTTTTAACACTGCGATCATGATCTTTAGTGTGACTAGAGCATCCCAATCAAGTTCACCAGCATCACCAGTCTGTTGCTGAGCAGAGGATTTACCTGGCAATACGCGCACCTCTCTGATCCTGAAAGCGACACAAGATCCTGAAGCTCATTGTCCATATTAAAGTGGACACACAGTCCCTGTCGTGGCGGACAACAAATGATTGTCACTGCAGAGGAGAACCTGTTTGCAAACTTTTGCCCCTTTCTTGTTATGTGTTGCTCGCTTCCCGGGGGAAAATGTCCTCGTACGCGGGGGGCAGTTCGTTGGGAAGAGGGTAAGAGAAGGGGTACGAGTGGTTCAGCTCTGGGTCTGTCGGGGAGTAGCCTGGCAGCTCCACCGAGGGATGGCCACCACACTGTACCTCCACGCCCGCCTCGTCCAAAACGTTGAACACCCCCAGGTTGATGTAGGACACCGGTTGAAACTCCCCCCCGGCCGGGTCCTGCTCCTCGCTGAAGAGGATGGCCCCCACGCTTTGCCTCTGGGACAGTCTCCTGCGGTAGAACTGGGCAGATTTATACCTCTTGATGATCACCAGGTTGACCAGCCCCAACAGACACTCCAGGGTGTTGAGGATGGTGGATATGACCAGACTCCTCTGATAATCCTTTAATTGCTCGCAGATGGCGATTAAATCCACCGAGTCCAGGCAGTAGTGGGAATATTTCCTCTCCACCAGGGACACGGTGTCGCCGTCTATCACGGCGCCCGAGAAGGCGGTGAGGACCCCCAGCATGAACACCAAGACCCCCAGGAGGAAGAAATTCTGGCTCCCCGGCTTGGCTTGGCAGCACAGCAGGGCAATCCCCAGTAGCGTTTGCCCCAGACAGACCAGCACCCCGGAGTAAAAAGCCCCGGCCGCCGTCCCCAGGTGGAAATGCACTTTTACTTCGGTGCCCTGCAAGAAGCATTGGATCCCGACGGCGACGGCGCACAGGGCGCAGACGAAGAGCAGGCTGCTGGACACGATGGCACACAGTCCTTTCCCACTCAACTTCATTATATCCCTCCTCTACCTCTCCCGGTCCCCGTCCCTCCTTCTTCATCCTCCTTTGTCCTCCTCGTCAGCCCGTCTCGGAGAGCTGTCAGACGGTGACATGATCCGCCGATGATTGCTCTTCAAAAGCAGGATCTCCGGAGCTGCGcgctctctccccctttcccgCTGCTTCCAACATGGATTAATTATTGATGGGAAGAGCCGGCTCCTTCTGCAGACAGGACTCCAGAAATCAGACCTAAAGTTAACCCTGGAGCGCGCTCTCTCTTCATGCTAGGACCAGAAGGCACTTTGGTCTGAAATGTTCCCATCCCGGCTCAAAGCGTGTTAATGAGGATATTCCTTCCTTGAAGCCAGCCTAGATGAAGCTAATTAAAGGCAGAGCGCGGATCGCTTGTTCTGTCCCCCGCAGTGATTACTGACCTCCAGCGCCTTGTTTAAGATCTCCTCCTGGTCCTTGCAGGCGTTCTCCATCATGTCTTCATACAGGTCCACGAGGAAGGCGATGAGATAGGGTGAGCTGTGCGTCTTCTGGAGCTCCAGGACCTGCTCAAGCAAGCCGGGGAACGTCGAGAGGCCTCGGTCCTGCAA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117916 lncRNA downstream 13669 30610821 ~ 30614319 (-) True G94533
TU117908 lncRNA downstream 39199 30585729 ~ 30588789 (-) False AMCG00017972
TU117858 lncRNA downstream 166815 30456198 ~ 30461173 (-) True G94483
TU117857 lncRNA downstream 167100 30459549 ~ 30460888 (-) True G94482
TU117757 lncRNA downstream 518806 30108971 ~ 30109182 (-) True G94392
TU117953 lncRNA upstream 59859 30718352 ~ 30721502 (-) True G94563
TU117968 lncRNA upstream 321402 30979895 ~ 30980552 (-) True G94577
TU117982 lncRNA upstream 720762 31379255 ~ 31380225 (-) True G94590
TU117983 lncRNA upstream 720762 31379255 ~ 31380225 (-) False G94590
TU117991 lncRNA upstream 799386 31457879 ~ 31458254 (-) True G94598
AMCG00017971 mRNA downstream 20860 30605513 ~ 30607128 (-) True AMCG00017971
AMCG00017972 mRNA downstream 31571 30585740 ~ 30596417 (-) True AMCG00017972
AMCG00017965 mRNA downstream 46992 30538968 ~ 30580996 (-) True AMCG00017965
AMCG00017966 mRNA downstream 113793 30491226 ~ 30514195 (-) True AMCG00017966
AMCG00017967 mRNA downstream 137160 30489476 ~ 30490828 (-) True AMCG00017967
AMCG00017977 mRNA upstream 133 30658626 ~ 30722050 (-) True AMCG00017977
AMCG00017976 mRNA upstream 86478 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017974 mRNA upstream 151911 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017975 mRNA upstream 174300 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017979 mRNA upstream 322557 30981050 ~ 30982903 (-) True AMCG00017979
TU117547 other downstream 1354820 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 1752065 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 2483399 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 4517914 26109060 ~ 26110074 (-) True G93796
TU117033 other downstream 4520183 26104026 ~ 26107805 (-) True G93795
TU118224 other upstream 1604283 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 1613201 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 1635527 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 1796592 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 1944425 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU220950 True 2251 lncRNA 0.48 1 CI01000046 34366 ~ 36616 (+)