RNA id: TU117945


Basic Information

Item Value
RNA id TU117945
length 4141
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G94555
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30718178 ~ 30722318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTGTCAAAGTATATTCATTTGAGGTTGAATTAGGTCGACAATGTATACATTCGTGTAATCTTCTTATAATTACAAACTAACTGAAAATAGAAACGAATGCTATTCAAGGCAATGTGCTGTACAgcctttaaatattaaatgaaacccAGAATCAAAGTAGAGTTCATTTATTCAGACGTCTTCCACTGTAACATTGCACAACAACGCAGAAACCCCTGATCAAATCAATTCCCAGGATGCTTTGTTGGAAACCAATCATATCATGAAAAACAGATCACTCGAGtgggagacaaaaacaaaactgaaaatataagaTGATGTACAATGCACAGATCTCCAGAACAATCAAAACAAGGactacaattaaaaacagaacaaacaaacaaaaaacggaAGTTCAGTAGTTTAAAAGAAATCATGTAGGGGGGACTTGTGAAAATACAGAATGAGATCATTATAAACAAACTGATATTGAGTCAGACGGGTGAGTTGCCTCTTGTCTCCAAGTCTCATCCATCAATTCAGAATTAGTACCACAATGTATCGAGCAGCTGAACAAGTTTTAAAAGTCAGTAGAGTAGTAGAGGCACTACTCAAAGTTGAATCGTACTCATGTGTGTGATCGGAGGACAAGCTTTTATCATATGATTAACAttgtacattataattattagattgttttggtattatttttactactaCTGGTCATGCACACTAACCCACTCTACTGTTGCGGTTTTTGTTTAGCAGAATCATTGTAAAGGACTGTGTGACTTTCTGGTCAACCTGTGCTACCGCGCAGCGCCGGCTTCATGCACAGTAACTCCAAACAATGAGATGATCTCAAATGCATCTGCAGgcataaattatttaaaagccgCAAGTAGATCAGCGGGCTTGCAAGCTAATTTGAAAGTAAACTGAAAGATTAGTGCCATGCAAATTTTCGTTTCCCTTTTCTGATTCAAAGCCAAATGTTAAAACCGGATAATGCCTCTTGCAGACGTTTTTCCACAGAGAATCAGGATATTAAAACCTCTTGCATAGAAAACACCCTGAAATGTATAACCATACAAGGATTAGTTACCATACTATTAGCGGATCAACTTCACGAGTGGTTTTATTTGCAGAGGAGAATGAAGAACTATATGTTGAATACGATAGTAGTTGGCGAGGCTGCAGGGGACTCCTCTTCTTGTTCAACAGCCCATTTTGTTCTCATATaattttgtgtgagtgtgttataAAAACAAGCAGCACTAGAAACACTCCCTTCGAGTCCAAGAGGAGGAGCACAGACCACAGTCACTCTTTTGCAGTGACATTTTAATGCCAAATGGCCCTGTGTTTGCGAAAAGATAAAGATTACCAAAGCCTTTGGGAAGGGTTTAcaaagctgcagttttggaaaccCAGTGAAGAGGACAAAACAcatctgcaataaaaaaaatcaaccatCAAAAGTGTTGcaaagcataaataaattatacagccCCCTAGACAATACCAAAAATGGCACAAACGCTTAAAAGAGGAAAGAATAAATAAGAGTGCTTGCAGTTTATTGAACAGAGAGGAGTAAACTTAGTCTAAACCACAGGAAtgatatgaaacattttttttttccagaaggGAAATAGAGCTTTCATTGATGCAAAAatctcattttttttccctgtccATCTCTTGCCTACAGCCACTTTGTTTCCTCAATACAAAAGTCCCTGTACAGTGGTTTCACCCCTGGAATGAGTATGTAGTTCAGAAAAATCAAACAACACCTGTAACTGCATTTGGGATtgcaaacaatcaaacaaggaaaaaaaaaaaagctacggCAAATTGGGTTGTCCTCGGGATACAGTCCGGACCCTAGTGAACCCGTGGAAACTTCAGTCAGCATAGCTCAGAGGATCACAGGACGAGGGAGATGCTTCCTGTTTTAGCGTTCACCCCCTGCGGAGCAATCGGGAGAAGAAAGACCAAGTCCCACCAACAATTTCCTCTGAGCACCAAGAGGTGTCTGGTGCTCCCTGTGGACCTCCAGCCATGGGGACTCAGTCAAGGCATCAGCTACTCAAAATGACAACCTCCTGAAGCTGAAGTACAGAAAGCAGAATGGAGAATTAGTGTGCTTTAGAAGCACAGAGTCTCCCTGTGCTCCGTTTGGAACATTGCTTCACGTTACTGAAGTCAGATTAGTTCAGAAAGCAAAACACATCGAACGTGTTATTATATGTGTGAATGAAGCCGATATCTGTGGCAGATTCTCCAGAGGTCCCCCTGGTTATTGCTACGGACGTGGAAATTATATTTGCACATTTGACTGCCTTCTCACCCGCAGGTGTTCTGAATTTACGATTGATGACGTAGAATATTTATGTCTTCTTCGATCTGTATCATTCGAGcgataaaaaaaagtttttacaaTACCGTATCATGTCTCTCTTTCTTATGAATCCTATTTacacaaagaacaaaatatcctaagcaataaatataaatctctaTAAGAACATGAATTCCGTACAGGTTCTCGTAAAGCTCTCTGTACAAAATACATCTGTAGATTGCATAGGTACTTTCTGAAAAGGTGTTTTACAGAACTAGAAGCTTATTCACAGAGAGCGCATAAATATCTACACACCGTTgattcagatttaaaaacagtccatgatctttttttccccaccaaaCAATATATAGCCATCCCATCTTTTAACAAAACACGTTCAATTTCTAGTTATTCATCGGGGGGAGttggaaacacaaaataaattcacaacGGGCTTGAGGCAACTAGAAGCACACGTTCCTAAAACAGATGGATTACTCAAGCTTTATGCAGAGGGCTATCCTTTAGAGGggtaataatatacatatgaGGGATCAGGAAAGTGGAGTTACAGAGAAGTAAAAGACAACATACAAGCCAGTGAGAAAAACAGGAACAATACTCAAGCTTATTCCACATTGGGAAACATGTACACAGAGGGAGAAGTTATACATAAGCAAGCTATATATGTCACATTATACACAGCCTATTTATATATACCaacaacaatgttttattatttataaccgTGCAATTATGTAGTTCTGAGAAGTGTTAAAACCACATTTAGGTGTCCGAGTTTGTCATGGTATGTTTCATGTCTTAAGAAATGGCACCACGACGGaggttttttaatataactttttCTTCATGAAAACCTGATTTGAAGCCACTGCAGACGTCTATTGGTGAATATGACTGatgcttaattaaatgtataatgtaaatagTGCAAAAACTTCCCTGTACCCATCCTTCACCATAGTTTGGATTATCATCTGAATGTGTGGAGGCAGGTTAGTTTCTATGTCCATCCAATCATCGGCTTCATGTTGACATGCCCTGGTTTTGGGGTCAAAATGTTGATTGaatgaacaaaaacagtaaattaGTAAGTGTGGTGCCATTACTTGTACAGAATCAAACCTGTGTCTTGTTATTCATGGTCTAGAAGCACAGAAACAGATGACAAAAACTTGAATATCAGCGTTAAAGCCCCCCCCTAAACAGTGTCACCCACAGATGATTCCTGTAAATCCACTGCACACCCAACTGCCTCCTTTCGAGAAAACAGGTTAGTTTTGCTTTAGTGTAAATACTGAATCATAACCACTCTCATTTAGTTGTATGTTGTATGTtggggatttgtttttaataagtatgataaattaaaaaagctaCATTATCCCAGCTGCTGAATGGGATCTGTAAAAACCCTGATTTTGACCATTTCAGCAgctcttaaaatacattcacagcCGTAGCCCTACATTAGTGTTCCGCCAAGATGGTGCCAACCCCCGCCCCCGCTTCATCCCCTGCCACCTGCGCCCTCCTCGCGCCGCAGCACGGTGCCCTCTCTCCTGCACCTCAGGTCCTGGCAGGGCGGTTCTGGTCCATGGCCGTGAAAAACACGCAGACGGCCGTGGTCACCAGCGTGTGCATCCCCTCGTAGAGCAGCTTGGGGGAGAAGACGCTCCAGATGAACAGGTGGTAGCGTAGCGCCGTGACGAGGACGACGTACGCCGCGGCCGGGATGGAGCGCAGCAGCGCAAAGCAGTAGCAGCCGTGGCTCATCGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117900 lncRNA upstream 127002 30585710 ~ 30591176 (+) True G94522
TU117880 lncRNA upstream 173624 30538968 ~ 30544554 (+) True G94505
TU117684 lncRNA upstream 737536 29978153 ~ 29980642 (+) True G94348
TU117632 lncRNA upstream 1067104 29650790 ~ 29651074 (+) True G94310
TU117630 lncRNA upstream 1140775 29577156 ~ 29577403 (+) True G94308
TU117957 lncRNA downstream 105124 30827442 ~ 30831863 (+) True AMCG00017978
TU117975 lncRNA downstream 602206 31324524 ~ 31340832 (+) True G94583
TU117984 lncRNA downstream 672828 31395146 ~ 31395366 (+) True G94591
TU117987 lncRNA downstream 695531 31417849 ~ 31418120 (+) True G94594
TU117992 lncRNA downstream 794510 31516828 ~ 31517029 (+) True G94599
AMCG00017973 mRNA upstream 61254 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017968 mRNA upstream 86943 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017969 mRNA upstream 103844 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017970 mRNA upstream 113935 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017964 mRNA upstream 180714 30520635 ~ 30537464 (+) True AMCG00017964
AMCG00017978 mRNA downstream 97551 30819869 ~ 30831867 (+) False AMCG00017978
AMCG00017980 mRNA downstream 886900 31609218 ~ 31621106 (+) True AMCG00017980
AMCG00017982 mRNA downstream 923507 31645825 ~ 31649592 (+) True AMCG00017982
AMCG00017981 mRNA downstream 937583 31659901 ~ 31675037 (+) True AMCG00017981
AMCG00017985 mRNA downstream 1018250 31740568 ~ 31745981 (+) True AMCG00017985
TU117593 other upstream 1267831 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 2074195 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 6002557 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 9896231 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 9902632 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 1685111 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1738980 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1785372 32507690 ~ 32601449 (+) True G94857

Expression Profile