RNA id: TU117982


Basic Information

Item Value
RNA id TU117982
length 259
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G94590
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31379255 ~ 31380225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatcttgacagcacaggctattcaaagggacttagataatattcagttgtgggccgacacctggcaaatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaatgcatgagaaagacctaggagtctatgtggactcctcactttctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117968 lncRNA downstream 398703 30979895 ~ 30980552 (-) True G94577
TU117953 lncRNA downstream 657753 30718352 ~ 30721502 (-) True G94563
TU117916 lncRNA downstream 764936 30610821 ~ 30614319 (-) True G94533
TU117908 lncRNA downstream 790466 30585729 ~ 30588789 (-) False AMCG00017972
TU117858 lncRNA downstream 918082 30456198 ~ 30461173 (-) True G94483
TU117991 lncRNA upstream 77654 31457879 ~ 31458254 (-) True G94598
TU117993 lncRNA upstream 136607 31516832 ~ 31517036 (-) True G94600
TU118024 lncRNA upstream 241375 31621600 ~ 31622378 (-) True G94622
TU118061 lncRNA upstream 360999 31741224 ~ 31741659 (-) True G94655
TU118071 lncRNA upstream 448234 31828459 ~ 31828800 (-) True G94665
AMCG00017979 mRNA downstream 396352 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017975 mRNA downstream 531026 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017974 mRNA downstream 567920 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017976 mRNA downstream 602814 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017977 mRNA downstream 657205 30658626 ~ 30722050 (-) True AMCG00017977
AMCG00017983 mRNA upstream 219433 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017984 mRNA upstream 242720 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017986 mRNA upstream 312102 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017987 mRNA upstream 482504 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017988 mRNA upstream 512248 31892473 ~ 31894806 (-) True AMCG00017988
TU117930 other downstream 720762 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2106087 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 2503332 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3234666 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5269181 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 882551 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 891469 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 913795 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 1074860 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 1222693 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile