RNA id: TU117987



Basic Information


Item Value
RNA id TU117987
length 272
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G94594
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31417849 ~ 31418120 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctcctgagcctcaagtagtatattcttaaaatatacccatccattttcaactgaatctgtatctaatgtgctccagtctacctcttctaagtgccgcctcataccttcaaggtttgcttttctaaaattgtagaccattgttttagacttggaccttgttttttgaaagaatgcctcaaagctaaccatattgtgatcacaatttgccattggttctctaactactgtccccctgactctatcttggtcatttgaaaagatcaagtcaatgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU117984 lncRNA upstream 22483 31395146 ~ 31395366 (+) True G94591
TU117975 lncRNA upstream 77017 31324524 ~ 31340832 (+) True G94583
TU117957 lncRNA upstream 585986 30827442 ~ 30831863 (+) True AMCG00017978
TU117945 lncRNA upstream 695531 30718178 ~ 30722318 (+) True G94555
TU117900 lncRNA upstream 826673 30585710 ~ 30591176 (+) True G94522
TU117992 lncRNA downstream 98708 31516828 ~ 31517029 (+) True G94599
TU117996 lncRNA downstream 181640 31599760 ~ 31603112 (+) True G94601
TU118004 lncRNA downstream 204336 31622456 ~ 31623543 (+) True G94609
TU118014 lncRNA downstream 210485 31628605 ~ 31629313 (+) True G94613
TU118070 lncRNA downstream 349516 31767636 ~ 31767848 (+) True G94664
AMCG00017978 mRNA upstream 585982 30819869 ~ 30831867 (+) False AMCG00017978
AMCG00017973 mRNA upstream 760925 30656133 ~ 30656924 (+) True AMCG00017973
AMCG00017968 mRNA upstream 786614 30620823 ~ 30631235 (+) True AMCG00017968
AMCG00017969 mRNA upstream 803515 30611050 ~ 30614334 (+) True AMCG00017969
AMCG00017970 mRNA upstream 813606 30596996 ~ 30604243 (+) True AMCG00017970
AMCG00017980 mRNA downstream 191098 31609218 ~ 31621106 (+) True AMCG00017980
AMCG00017982 mRNA downstream 227705 31645825 ~ 31649592 (+) True AMCG00017982
AMCG00017981 mRNA downstream 241781 31659901 ~ 31675037 (+) True AMCG00017981
AMCG00017985 mRNA downstream 322448 31740568 ~ 31745981 (+) True AMCG00017985
AMCG00017989 mRNA downstream 697041 32115161 ~ 32123373 (+) True AMCG00017989
TU117593 other upstream 1967502 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 2773866 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 6702228 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 10595902 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 10602303 20799595 ~ 20815546 (+) False AMCG00017747
TU118260 other downstream 989309 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 1043178 32461298 ~ 32465063 (+) True G94838
TU118319 other downstream 1089570 32507690 ~ 32601449 (+) True G94857

Expression Profile