RNA id: TU118024


Basic Information

Item Value
RNA id TU118024
length 779
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G94622
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31621600 ~ 31622378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGAAACGGCAGCTTCGGCCACAAACGCGGTCTTCTGCTTCAGAAAACTACAAATAGGGTTCTTTGGTTTCTGATTTattaaagttaacatttaaGCTGATGCTTGTGTAGATTTCATCAAGCAGTTTAAATGCTCATtgcacaagaaaaataagtccTTAttagctttaatttaatttgtagcTTGTGCAGAGATGCAGAAATGATTTGGCTTAGCTAgacccctgcacacacactgcactgttctATATTAATCCGCCTGTGcaggtttttttcccccctcataAGTATTATGGAAGTTACTGGTCTAGATCACATAAAGGTAATGtagttaaaatgaacacaatataTTTGCAAAGGTATGAATGTAATTGGTTTATGCAAAATAACTTTTTGAAGATCAATCCTATTCCTTTGTTACCTCCAGTAGTTATGTTGCAATGCTTCAGATATTTACAAGCTCTGGAATGGCAATTcagttgttaattttttttaaatctgccagcagagggcagcacaCCCTGAACTGCCAGGAATTGGCCGTTCGTGTGCAATCGAGTGCTGGAAGTGCCAGTTCTATGGAAGATTAACTGCCCAGATTTAAAACTCAGCTGTTTGCCAATACTGTAACAGTGCTCTGGATACTAATGTCAGTAAAAAGTGGTAGACTACTTTTATGTACTGGAGTATTTGAATTGGTTTTCCAGACTTCTGGCAGGACTTCAACACTAAAACCAGGTTCTCTGCAAATTGTCTGGAAAATTAAAACTAACCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117993 lncRNA downstream 104564 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 163346 31457879 ~ 31458254 (-) True G94598
TU117982 lncRNA downstream 241375 31379255 ~ 31380225 (-) True G94590
TU117983 lncRNA downstream 241375 31379255 ~ 31380225 (-) False G94590
TU117968 lncRNA downstream 641048 30979895 ~ 30980552 (-) True G94577
TU118061 lncRNA upstream 118846 31741224 ~ 31741659 (-) True G94655
TU118071 lncRNA upstream 206081 31828459 ~ 31828800 (-) True G94665
TU118171 lncRNA upstream 569805 32192183 ~ 32196606 (-) True G94747
TU118233 lncRNA upstream 722872 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 1033652 32656030 ~ 32661641 (-) True AMCG00018020
AMCG00017983 mRNA downstream 13901 31599658 ~ 31607699 (-) True AMCG00017983
AMCG00017979 mRNA downstream 638697 30981050 ~ 30982903 (-) True AMCG00017979
AMCG00017975 mRNA downstream 773371 30832793 ~ 30848229 (-) True AMCG00017975
AMCG00017974 mRNA downstream 810265 30810404 ~ 30811335 (-) True AMCG00017974
AMCG00017976 mRNA downstream 845159 30744971 ~ 30776441 (-) True AMCG00017976
AMCG00017984 mRNA upstream 567 31622945 ~ 31644198 (-) True AMCG00017984
AMCG00017986 mRNA upstream 69949 31692327 ~ 31715433 (-) True AMCG00017986
AMCG00017987 mRNA upstream 240351 31862729 ~ 31883678 (-) True AMCG00017987
AMCG00017988 mRNA upstream 270095 31892473 ~ 31894806 (-) True AMCG00017988
AMCG00017991 mRNA upstream 465769 32088147 ~ 32111464 (-) True AMCG00017991
TU117930 other downstream 963107 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2348432 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 2745677 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 3477011 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 5511526 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 640398 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 649316 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 671642 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 832707 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 980540 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile