RNA id: TU118171


Basic Information

Item Value
RNA id TU118171
length 4402
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G94747
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32192183 ~ 32196606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGAAAAGTACGTAATTTATTGGACAACTTTCAAAACATACATGTGCTTGCAAAATCCACTTATGCCTGACAACAAAAGCTACAGTCCATTTTTCCCCTAAATTAAACTCGTCTCATTGTTTCTCTTCTGTGCAAACACTCTGCTAGTGCAATTCTCTCCTTCAGTCCCTCAGAGAACTCGCCGTTCCtcgactctctctgtcctccgTGTCATCCATCTGCAGTCCAACGCTGCGGCACGACAACGTCGCCATCGTTTCGGGTGCGAGGGGTCGTCCTCCTCTCCGCCTGCTCCCCTGCTCATCCCTCTGTCCAACATGACTCTCACCCTCTCCACTTCTCTCCACTTCCCTCTCAACAGTCCTACCCAAACCATCACGAACCTCAGCACAACATTGTAAACACTTGACAGCGTGGATCAGGTTTAGTTTTTCATAAAGCAAGCATTGACATTCGtgtgttaatgtattaatgtattaatgggCCGAAATCGACAGCTACAGGACTCTGCTGTCGGGTTTGGGTAAAGTGTCATTTAAGTtccaaaaaaagaataatactaAAAGAAAGTCACTCCTTAATGCGAATGAGAACTTGAAccacaattcattattttaatcatcaGCGCAGAAACCTGGGCAAGAATGAGGCGTCAACACGTTTGCTTTGGCGGTGAATAATGTTCCAAAACTTTTGTAAACCTGCAACCTTCTTTCTGTGCATCAGTTAGTCTGGAAAAGTAACTCGACTCTCGCATATGTAATCGGTACAAATTGGCGAGAAGCTATTGAACACAAATCTCTCTTCGTATCCACCGGCTTGAGAACAAAGACTCCGCAGTGTAGATCTCACCACAGCCCTCGGTGTGTCGGGGAGCACCTCGGCCACAGTTTATCATTTGCATCGTATTTTAATCTCAGGATTGTTTTAAGCAAAACACACAACGGAAAATATTATAACAAGTACAGaagtttataaatataattcacCACTACTAACCAAAACAGGTGGCGTGTTTAAACTGCACGCTCTCTGAGCTTTGTAATGTTACCGTGCTTTTGGTAACTTAAAGTCCCCTCGTGATTTATCAGAAAGCTCTGAAGAAAACCCAGTTACTCCATTTCCCTTAGTTGCTgcatcaatcaaaacaaaccctttAATCCGTTTAATTGTAGTTACACAAATGTGTTCATTCAcgattataatattaataaattcacacacacacagctcatcctggattaaataaataaataaaatcatcttGATAAACGTGGCCGTTCGTTGTAACTTCGGTGTCGATCTAAAGATTTTTCAAGTGTAACGGACAGAGAAAAACCTGAGGTTGCAGTGCAAATCACACCAATGGTGCTCTGGAATTTGCTCAGGAAGCAGCTTCTACCAAGACAGACGCTGTTGCATGGACAGTTCGACTCACAGAGACTGTTCAACAATATTGACCTGTGTGCAGATAACAGACTGACCAGCAGTTCCACATACCTGCGCTTGGTTTTCAATTGAACAAACCTGATAGTAAGgatgatacaaataaaaagacagcAACCTATGCATACTCAAACAAGATCGATATAGGGCTTATAGGTTCTTACAAAATCTGCAAAAAGCACCACTGGTTTTAAGAGCAAGCGTGTCACATATTGGTAGCTTAGAAGGGTGAAGGGGACGGGTTttacttgttatttatttggttaaaaTGTTAAGCCTCAGTATTTCCCTTCTTTGGATCTCGTTCAGAAGCCTCCTTACTGTTCGTGACGAGACGTACAGCACAGCAGCTCAGAGACGAAGCACGCTCGTTCACGACACGCTGACGTGAGAAAAGGGCTCCGAGAGGCGGGGAATGAAATCTGCACCAGACGGAGCCAATGTGAAACACTGACCTCGATTCATTTAACTTTGATCTGGGAATGCTTTAAGAAAGTGTAAATTAAATCATTGTTGACTTGTGAATGTTTATGTGTCTACAGCTTATATTGActgatctatctatctgtctatctcaGAAACACTGGAAAGATGTTTGGTGTTTAGttcagtgaaatatatttgctCTTTTAAACAGTGTAAAAAGGCATGCATTTCATAGTGTAGTCagttcatataaaaataatctagcctttgttttagttaattgaagaaaaacaaaaccaaacaaaaaacattctgttctattatttagttttaatgtcGGCACATGAATGAGCTTGTTATTACTGGAAATAAGAGAGCTGCCCCCCCCCAGGCACGAGAGTCTGCATATCAGCTGAATGACACAAGGGGAGCGTCTGTCCGCGCCATTGTCATCATCACCGTCATCGTCGGCCCTGCTCCTGCCATTCAAGCGCAGCTTAGCCTGCCCCCCCGCTCTCCTGGGAGAGGGTCGTGTTCACGGGGATGGGGCCGAGGTCCCGCAGTCCTGCGCACTCCCCCCGTCGCAGTGGGGGGCTCTGCTCTGAGCCGTGGCCCATAGAGGAGACCGTCCCCTAGACGGCCACAGGCCCGGCTGCTCCCCAGCGCCTGGCGCTACTTGGACGGCTACTTCACAAGTAGACCCCAGGCCGGGCCCTGGCACGTCAGACACCAGAGCCACCAGGGGCCGCAGCTCTGGAGACCAACATGGCGGCCAAAAATCATGCATTATTGTTCACTTGTCGATTGTTTTCCCCAAGTGTCACAGGAATTGTGGCACAAGTACAGCGTTCTGTACTGGGAAAAAACCAACAACCCCCGGCCCTGCGCAGGACTCTGTGACCGCACCCCCGACCCCGCGGCGCCGACTGTCTTTCCAAGAAGAGCGAAAGGGGCGAGAGACTGACACTGAGGTTGAATAACAAGAACAGAGCAGATCACCATAATAGTCATGACAACACCGATTCAGACAGAGAGAAGACTCTAAGTCAAAAGGCCATTCGCCGCCCCCCCTCCACACAGAGCCTACACTTGCGCTGTGTCAGTCATCGCCGGGGCTGAAAGCAGGGCATAAAATAGCAGATGACTTGCAGCATGGGAAGTGGGGTGGCAATGAAAGCTGACCTGTGCCATCTTGCTATCTCTGCTCGTTTGGCCAGGGCAGCGCTGTAACTCAAGAGCGGCGGACATCTCGTCCAGCCGGGGCGCTCTGTACCGGCTCTGCGCTTTGAAGCGGCGCTGCTGCCCGGGGGAGGGAGCGGGGCAGTGCTGACTGGGGGGTAGTTTAATCTGTCTGCCACCGTCTTTAAAGGTGACTCCCATAAAAACGGCAAGGCACCCCGGGACTCTGCTAGAGAGAATGAAGCATATTAAGTGCCGAGTCGAATGTCTCTCTGCAGAGTGCAGTGTTAACGGTGCCAGTCAGGTTCATTAACTCAGTGTAATGTGCCCTTGAGCAAAGTGTGCTTGAGAAATAATACAGGGAggccaaagaaagaaagaaaaaaatctaaaattaagaaataaatagttttaatacTTTGATTTCTCGtgtaaaactgaacaaaatccACCAAATTAAGTCCACTTTGCTTCACATACGTTTACAGTGATTGTCAGAGTTGTGAGGTATTCATGTTAAAGATACAAGATCCTGAAAGTGCAAAGGGAAGACAGGATTGCTGAGGGTGTCTAAATGACAGATACgtctgtaaactgtaaactgaCTCAGAAAAGCACCATCAATGCAACTGGAAGAAACGAGGACAGTGGAAACTGACATTGGAGTATAAAGTATGCAAAGCTGTACTTTGActttgtttactgtatgtgcattttaatttactcaAGGATATTCCTTCCCAGCAAACAAGCGTTAAATGAACTGAGGGCAAATGTACAGCGGAAAACTTTCAAACTGTTTTGCGCGCGTGAAGAGGGACTCTTCTGTTCGGTTGCTGCCAATTCTAACGGTACAACGAGACCCGGGAGGGACTCCTATACAGTCAGTCTGTGCTTCAGCAAATGGTGGGTTTGGTTAACGGTAGCACACCCATCATGCGGAGAGATCTTACACTAAGGGAAGAGCATTTTAGGTTAGTTTTACATAAAAAACTGCCATTAAAAGATGCAAAATCGTCACAATAAAaccaattttaatttgttttgtttcattgtctCAATAAGTGCCTGAAATTTCAACTAGAATTAGATGCGAAGATGTATAAAGCAGGATGATATAGTTAACAGAGAAGAAGCAGCTGTGGGGGGGGCACAGTGTCAAAGATATATGCATGCTGCAGAGATTAACAAAACATCAGTTAAAAatttgtgggggtggggggggtgttcaGTAAAGCTGGTGAAACACAGGTTTCTGATGGAATAAGCGCagtaaaaaagagaaaaaaagaaaaagcctgaCAGAGTCACGCAATCTTCGGAATTGCGAGAAGATTCTTCATAACTTGC

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118071 lncRNA downstream 363383 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 450524 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 569805 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 675147 31516832 ~ 31517036 (-) True G94600
TU117991 lncRNA downstream 733929 31457879 ~ 31458254 (-) True G94598
TU118233 lncRNA upstream 148644 32345250 ~ 32346583 (-) True G94791
TU118408 lncRNA upstream 459424 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 593173 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 651660 32848266 ~ 32848466 (-) True G94936
AMCG00017994 mRNA downstream 18321 32164063 ~ 32173862 (-) True AMCG00017994
AMCG00017993 mRNA downstream 28202 32155771 ~ 32163981 (-) True AMCG00017993
AMCG00017990 mRNA downstream 40507 32143816 ~ 32151676 (-) True AMCG00017990
AMCG00017992 mRNA downstream 51732 32123130 ~ 32140451 (-) True AMCG00017992
AMCG00017991 mRNA downstream 80719 32088147 ~ 32111464 (-) True AMCG00017991
AMCG00017999 mRNA upstream 3147 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00017998 mRNA upstream 37245 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00018000 mRNA upstream 63101 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00018004 mRNA upstream 75220 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018007 mRNA upstream 88879 32285485 ~ 32308080 (-) True AMCG00018007
TU117930 other downstream 1533690 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 2919015 29269235 ~ 29273168 (-) True G94238
TU117465 other downstream 3316260 28874161 ~ 28875923 (-) True G94172
TU117337 other downstream 4047594 28103299 ~ 28144589 (-) True AMCG00017906
TU117034 other downstream 6082109 26109060 ~ 26110074 (-) True G93796
TU118224 other upstream 66170 32262776 ~ 32263531 (-) False AMCG00018000
TU118225 other upstream 75088 32271694 ~ 32276372 (-) True AMCG00018004
TU118217 other upstream 97414 32294020 ~ 32295433 (-) False AMCG00018007
TU118287 other upstream 258479 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 406312 32602918 ~ 32605751 (-) False AMCG00018021

Expression Profile