RNA id: TU118233


Basic Information

Item Value
RNA id TU118233
length 669
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G94791
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32345250 ~ 32346583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctGATCGGACCAACTTCAGTCTTTATTGTACATCTTAGGACCCATGTTTTTTTGtcgtttgttttcctgttttgtttcatgaCATTTCAAAAATGAGCAAGACcagcgaggaagaggaggagcggGGGGCGGTGACATCGCTGCGGCCGGGCGTGGGGGGGCGTGgatggagggaaggagagggagagagagagacccccgGCCCGGCCTCACACTTACAAGCGCTACATCTCTAtttgggtgtgggggggggtgagcAGGGATGGCGGAACACAGTCACCACCGATTGACTGGACCAGAACCAGAACATGCACGTCTCACTATGGGCTCGAGGACAGAGGAACACGCGACGCACACGGCATGGACGTGACTTGagtttatatctatttttttttgtagtttttagttttttggcaGATTCATATCACAGCTATGGTCTTAAAAAGTATTACTATCAGTTATTACGAGTTTTATTGTGTAATATTGACGAAGGCTACCTACAGCAGTCCTCTCTGGCGGACGGCCGGTTTCCCCGGACGGGCTGCGCAGGGCCGTCGATGCATGCACAAAGAGTATAaaatgtgtgggggggggtgctCTTCTCGTCCGACAGCAGCTTGTGCAGGACCTGCACCAGGCCGGCGCTCTCGAAGTCCTTCTCCGCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118171 lncRNA downstream 148644 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 516450 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 603591 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 722872 31621600 ~ 31622378 (-) True G94622
TU117993 lncRNA downstream 828214 31516832 ~ 31517036 (-) True G94600
TU118408 lncRNA upstream 309447 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 443196 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 501683 32848266 ~ 32848466 (-) True G94936
AMCG00018007 mRNA downstream 37170 32285485 ~ 32308080 (-) True AMCG00018007
AMCG00018004 mRNA downstream 70415 32271826 ~ 32274835 (-) False AMCG00018004
AMCG00018000 mRNA downstream 81385 32259707 ~ 32263865 (-) True AMCG00018000
AMCG00017998 mRNA downstream 97072 32233851 ~ 32248178 (-) True AMCG00017998
AMCG00017999 mRNA downstream 134284 32199753 ~ 32210966 (-) True AMCG00017999
AMCG00018006 mRNA upstream 912 32347495 ~ 32360816 (-) True AMCG00018006
AMCG00018009 mRNA upstream 33929 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018008 mRNA upstream 34967 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018015 mRNA upstream 78442 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018016 mRNA upstream 115011 32461594 ~ 32478852 (-) True AMCG00018016
TU118217 other downstream 49817 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 68878 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 81719 32262776 ~ 32263531 (-) False AMCG00018000
TU117930 other downstream 1686757 30627988 ~ 30658493 (-) True G94543
TU117547 other downstream 3072082 29269235 ~ 29273168 (-) True G94238
TU118287 other upstream 108502 32455085 ~ 32456410 (-) True G94835
TU118334 other upstream 256335 32602918 ~ 32605751 (-) False AMCG00018021
TU118371 other upstream 301881 32648464 ~ 32652684 (-) False G94887
TU118375 other upstream 301881 32648464 ~ 32652684 (-) True G94887

Expression Profile