RNA id: TU118291


Basic Information

Item Value
RNA id TU118291
length 3743
RNA type TUCP
GC content 0.53
exon number 2
gene id G94838
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32461298 ~ 32466636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAACTTTAAACAAAACTTTATTTGTACatactcattttgtttttaatgtacaatcAAACCATCAAGGTAATCAAGACGTAAAACCCCTACTAGTCATGTGCAGCTTTAACactaatataaattaaagacaTCACGGCCCCAGTGCAGGGCGGAGCGGGGCCACACCGCGGCCGGCAGGACGGCGCTCCGGCACGGGCCCCCAGCACAGCGGTGAGGAGCGGCTGTAGCTTCTGCAGATACGGTGCTACGCATGTTGCGATGGAAACGGCAAGATGCATGGAGAGCGCGCGCTGCGTCTCCTCTGCTGCCAAGGGCCCCTGTGGTGGAAGGGCTGCCCAGGGCCACGGAGGCCACGCTCACAGGAAGCAGGCTGGACACAGCTACTCCCAGACATACTCCACTTCAATTATCTTTCCAAATAATGAGTTGACGAATACGTAAACAACGTTGAGATGAGGCTGTTGGTGTCGTGTTCTCTGGGCAGTATCAGaactcatatatatacatatagattaGAATAAATACATCCCGATTACATCTTTAATCAGgatattttattctaattagTAAACAATTAGTAGAGTgaatttttgtctttttttttttttttttgtctccaagGTTAAAAGTGAGTGAAAacaaggaatgaaaacaaaaccatttcatttgtttcattaaaGTACTGGATTATTTAGTTTCCTCTaagagtagtagtagtaatagtagctTCTGAGACAGGTCCTCCTGTACCAGAGTACACGGGACAGTCAGCCATCCATTCAtttccttctcctctcctctccgaCTGCGGGAGACGCTCCCGTTCGGCGTCCCTCAGCGCGTCACGGCCGCCGACACGCTGCCCTCCTCCCTGCGACGCCAGACTGGGTTCTTagtgtttctttgtatttcccGTCCGTCCTtcgcaaataaataaaaccgaaGGAAACAAAACCGCGTCTCAAtatgagggggggggggctgcggCTCCCGAGGGGCGAGGGTGAGAGTGGGGCGCGGGGACTCGCCGACCCGTGTGACCCCCTCAGTGCCACCGGGACGGGGACTCTCGGCGCCCATCGGTACCTGGCTCTCCTCCGTCCTTTAAACTGAGATGTCGCTAATTTCCCTCGGTATTCCCTGTGTGCGTGACCGCGGTTGTTCTAATGGTGGTTATTACGGTTAGTTACGGTTTGTGCGGCGCCCCGGGGGGGTCAGAGAGCCGTGCCGGTCAGCAGCTGCACCTCCTCCTCCGCCGGCTCGCGCACGCCGCTCGCGGGGCTCAGTTGAACATGATGGACTCGGGGTCGAGGTTGGCCATCTGCGCCATATGGCGGAGGATGTCTTTTTTTGTGATGATGCCAAGGAGCCGCCTGCAAgacgagagagagggagaggggcggTCAGCGGGGGGGCGGTACCGGGGGTCTCTCTGTCGGCCCGAGGGAGGCAGCTGGCTCGCCTGCTCGGGAGACGCTGTGTGGGACAGAGCTGGTGTCACAAACCGCAGCCATCGTGGTGCGCTATTGTGTTGTGATGTTACAGGACAGCCGCTGGTTCTGTGTTCAACCTGCCGCAGTGCTTTGTACGCCGGACTCGGCCCTCGGCCCGGGACACAGCTGCAGTGAACCCGTCCGTATGGACCTGTgggtgtctgtatgtatgtatgcgtcTGTTTCAGCGTCTCGAGCGCTGCGGTGGGCGATCTGCTCCAAGGCCGACAGAAAGACTCAGACTCTGCGTTTCAGGGAAGGAGGGGAGGGAGTGTGAGTGCTGAGGAATAATGGATCTACCCGTCTACAGGACACAGATGGATTAACACAGCGTGGCCCCCCAGccccatccctccatccctcctcACCCCACCCAGGTTTTCCCTGCTCCCTCATCATGAGTTTCAGTCATAAACCCGCTCTTTCCCTTGATTTCCAACCAGGGCACTTCACCTGGAATACACTCGTGAGAATTCAAAAGCCCgaggattctctctctctctcattttttatttttccctgtatttgtgtatttagaaCAGTAGCTAGTAAATCATCGCATCAGTACGTAGCCGAGGCCGAATCTCACGGCGCTCTCAAACCCGCCGCTGTTGAATTCTCACGTGGAAACGTAGACCCCCTGTCCTGTCAGTTCCCTGCGCGACGCTGGAGTCGGGGAGCTACGGGAGACGCCAGAATCGGTGTTAGAttaggagacagagagagagggaggatgagTCACACGGACCCATCCTGAGGGAGGAAGACACgtaggtggtgggggggtagagCAGTCGAGGGATACAGTGGCAGCCTATCAGGGCTACAGTGGAAATACGGACACCGCGGGAGGCATGAAACTCCGGTGACCCTGGCAGCCAGGTGAGCCACCACTGACCCAGTCCCCCCGGGCTCTGCCGCTCCGGGTGGGGACGCCGGGACCCGAGACCCAGCGGGACGAAGCCCGAGGTCAGGACCGAGGCTACTGACTCCACAGTCCTGCCCTGATTACAGCCGAGACTGAGAGGCGGGGGCGCCCCAGgggctgtttatttttgtcaatcCGTTTCCTGAGTGCCAGAGCCGCCCGCAGGTTTCATGCCCCCCGGGCTTACAGGGCCAGAGCGGCCGGAGTCGTCTCTAGTCACCGGGGGCGTGGCGCGCTGCTTGAGCTCCTCGAGGTGCTCTAATATATTCTTCTTGGTGATGATTCCCAAGACCATCCTGCAACAGATCATGTGACTAATAAACGGGGCTGCAGACAGcaagcaaacagacaaacagacaaaacagaatCATGATGCGAagggtgtgcatgtgtgtacagtgtgtgtatgtacagtgtgtgtacagtgtgtacatgtgcgtgcagtgtgtgcgtgtgtgtatgtacagtgtgtgcaatgtacagtgtgtgtgtgcagtgtgtgtatgtacagtgtgtgcagtgtgtgtatgtacagtgtgtgtttgcagagtgtgcatgtgtgcagtgtgtgtgcagtgtgtgtgtgtgtgtgtgcagtgtgagtACAAGTCACCTCCAGGATGATTGGCACCCTGAGaaagctgtataaaataaacaacacaggtaCTGAGCTATACTGTAATCTGTCACAGTTATTGGCCCCCTTGTTTTGGTACTTCGTGGCCCCTCCCCTTTCAGGGATAGCAGCGCTGAGCCTCTGTGTCACTGTTTCTGAGACTGGAGATTAAGAGCATTAGACCATTCCTccacacacaatctctccagGTCCAGGACATGCGTCGCTCTGCGCTGATGGACTGCTTTTCACTGGAACCAGGTCTGGAGACGGAATCGCTGCAACGTCAATGTCGGCGTCCTGGCCGAGGCAGCCGGCTCTCGGCTGAAGTGTCCTGACACCTGGCCGAGTTCATGACACTGCTGACTTTAACAAGGGCCCCAGGACCGGTGGTAACACAACAGCTGCAGCGCATCAGATCCAGCCCTGTCGTACAGCAGGGATGAGACTCTTCCATCGACGCTAAACCCACCACTGATCAGTGCGGCGAACAGATCAGATCTCATCTGACCACGAGACAATATACACAAATAGTACTTAAAAAGAAACGTTTTCTCTGAGCGGTTGtattagtataaaataatatagttttcACATATTTGAGCATAAAATATAACTCTTTGCCTGCggtgtttattttatgcagCCGTTTCTGTTCATCTCAATCAAGAGGtgactgtatgtatatatgacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118234 lncRNA upstream 110935 32347462 ~ 32350363 (+) True G94792
TU118236 lncRNA upstream 110935 32347462 ~ 32350363 (+) False G94792
TU118191 lncRNA upstream 224107 32233771 ~ 32237191 (+) True G94763
TU118156 lncRNA upstream 296001 32164819 ~ 32165297 (+) True G94739
TU118126 lncRNA upstream 368254 32091420 ~ 32093044 (+) True G94713
TU118325 lncRNA downstream 52060 32517123 ~ 32535900 (+) True G94858
TU118392 lncRNA downstream 281761 32746824 ~ 32762583 (+) True G94899
TU118399 lncRNA downstream 324762 32789825 ~ 32793141 (+) False AMCG00018027
TU118400 lncRNA downstream 329692 32794755 ~ 32797498 (+) True G94906
AMCG00018011 mRNA upstream 541 32442543 ~ 32460757 (+) True AMCG00018011
AMCG00018013 mRNA upstream 22292 32429234 ~ 32439006 (+) True AMCG00018013
AMCG00018014 mRNA upstream 32539 32425539 ~ 32428759 (+) True AMCG00018014
AMCG00018012 mRNA upstream 36063 32407452 ~ 32425235 (+) True AMCG00018012
AMCG00018010 mRNA upstream 58541 32391242 ~ 32402757 (+) True AMCG00018010
AMCG00018019 mRNA downstream 125112 32590175 ~ 32592904 (+) True AMCG00018019
AMCG00018018 mRNA downstream 129109 32594172 ~ 32601494 (+) True AMCG00018018
AMCG00018017 mRNA downstream 142350 32607413 ~ 32652684 (+) True AMCG00018017
AMCG00018027 mRNA downstream 324378 32789441 ~ 32793604 (+) True AMCG00018027
AMCG00018026 mRNA downstream 375960 32841023 ~ 32845300 (+) True AMCG00018026
TU118260 other upstream 49925 32407429 ~ 32411373 (+) False AMCG00018012
TU117593 other upstream 3010951 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 3817315 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 7745677 24705379 ~ 24715621 (+) False AMCG00017829
TU115792 other upstream 11639351 20820511 ~ 20821947 (+) False AMCG00017747
TU118319 other downstream 42627 32507690 ~ 32601449 (+) True G94857

Expression Profile