RNA id: TU118319



Basic Information


Item Value
RNA id TU118319
length 890
RNA type TUCP
GC content 0.66
exon number 7
gene id G94857
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32507690 ~ 32601449 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCAGCCGGACAGTTACTCTTGACAGGGTGGACGATGCACACAGCTCTGCCGGCACCTGGACTCTGAGGGCCGCACACAGTCCGCTCCCCACGCCCGGCGCTGCGCCCCGGAGAGACTGACAGCAGGCTCGGGCACCATGGCCTCTCCCACCTCCTCGTCGCCGGGAGAAGGGTCGTCCCCGACGGACCAGGACCGCATGCGCCAGTCTGACAGCAACACGAGTTTCCTGCGAGCCGCCCGCGCCGGAAACCTGGACAAGGTGCTGGAGTATCTCAAGGGAGGAGTGGACATCGGCACCTGCAACCAGAATGGACTCAACGCGCTGCACCTGGCCGCCAAGGAAGGCCACATCGAGCTGGTGCAGGAGCTGCTGGACAGAGGCTCGGCCGTGGACTCTGCCACCAAGAAAGGGAACACGGCCCTGCACATCGCCTCGCTGGCGGGGCAGGGGGAGGTGGTGAAGGTCCTGGTGAAGCAAGGCGCTGACGTCAACTCTCAGTCCCAGaaCGGCTTCACCCCGCTGTACATGGCAGCGCAGGAGAACCACCTGGATGTGGTGCGCTACCTGCTGGAGAACGGAGGGAACCAGAGCACGGCCAcggagGACGGCTTCACCCCGCTGGCCATCGCGCTGCAGCAGGGCCACAATCAGGTGGTGTCCCTGCTGCTGGAGAATGACACCAAGGGCAAGGTGCGCCTGCCCGCCCTGCACATCGCTGCCCGCAAGGACGACACCAAGTCCGCCGCTCTGCTGCTGCAGAACGACCACAACGCCGACGTCCAGTCCAAGAGCGGGTTCACGCCCCTGCACATCGCAGCTCACTATGGCAACGTCAACGTGGCCACGCTGCTGCTGAACCGCGGCGCTGCGGTGGACTTCACGGCCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118290 lncRNA upstream 41054 32461298 ~ 32466636 (+) False G94838
TU118234 lncRNA upstream 157327 32347462 ~ 32350363 (+) True G94792
TU118236 lncRNA upstream 157327 32347462 ~ 32350363 (+) False G94792
TU118191 lncRNA upstream 270499 32233771 ~ 32237191 (+) True G94763
TU118156 lncRNA upstream 342393 32164819 ~ 32165297 (+) True G94739
TU118392 lncRNA downstream 145375 32746824 ~ 32762583 (+) True G94899
TU118399 lncRNA downstream 188376 32789825 ~ 32793141 (+) False AMCG00018027
TU118400 lncRNA downstream 193306 32794755 ~ 32797498 (+) True G94906
AMCG00018011 mRNA upstream 46933 32442543 ~ 32460757 (+) True AMCG00018011
AMCG00018013 mRNA upstream 68684 32429234 ~ 32439006 (+) True AMCG00018013
AMCG00018014 mRNA upstream 78931 32425539 ~ 32428759 (+) True AMCG00018014
AMCG00018012 mRNA upstream 82455 32407452 ~ 32425235 (+) True AMCG00018012
AMCG00018010 mRNA upstream 104933 32391242 ~ 32402757 (+) True AMCG00018010
AMCG00018017 mRNA downstream 5964 32607413 ~ 32652684 (+) True AMCG00018017
AMCG00018027 mRNA downstream 187992 32789441 ~ 32793604 (+) True AMCG00018027
AMCG00018026 mRNA downstream 239574 32841023 ~ 32845300 (+) True AMCG00018026
AMCG00018033 mRNA downstream 311872 32913321 ~ 32914729 (+) True AMCG00018033
AMCG00018034 mRNA downstream 345419 32946868 ~ 32947806 (+) True AMCG00018034
TU118291 other upstream 42627 32461298 ~ 32465063 (+) True G94838
TU118260 other upstream 96317 32407429 ~ 32411373 (+) False AMCG00018012
TU117593 other upstream 3057343 29433412 ~ 29450347 (+) True G94275
TU117380 other upstream 3863707 28642730 ~ 28643983 (+) False AMCG00017910
TU116638 other upstream 7792069 24705379 ~ 24715621 (+) False AMCG00017829

Expression Profile