RNA id: TU118375


Basic Information

Item Value
RNA id TU118375
length 4170
RNA type TUCP
GC content 0.50
exon number 3
gene id G94887
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32648464 ~ 32652684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATTTAAcacttgtacattttatttcaatcagCCATGTACACACTGCAGCTGCTATGCAttgttagtgtttatttttttaattagtttaataacTAATACATGCCCtcatagatatttatatatatatgtatataattgttaTCACCATGGAAACAAGATGCTGATTCACCAACTTAAATGTTTACTGCTCACAGGTCtcgttatttttaaatttctcgATTACAATCAAAGTAAAGAGTGAAGTGAAAACCAGAATGTCGTTACATAGATACGCTCTGCATTGCGAACCACAGCACGGGAACTCTGTGCCAACCACAGCACGGGGTACTCTGTGCCAACCACACCACGGGAACTCTGTGCCAACCACACCACGGGATCTCTGTGCCAATCACAGCACAGGAACTCTGTGCCAACCACACCACGGGAACTCTGTGCCAACCACACCACGGGAACTCTGTGCCAATCACACCACAGGGACTCTGCCAATCACACCACGGAGACTCTGTGCCAACCACAGCATGGGAACTCTGTGCCAATCACAGCACAGGTACTCTGTGCTGCCCCGATGTCATCCGCAGAGACGCCCGCCCCGGCGCCAGGACCGCCTCTGAAGCGTGGAAGTGAACCGCAACTCGGGAAGCATttacacaacagcacacaaacactggaAGTCTCTCGTTTCCTGCttcttctactttttttttttataaaccaacgtatctatttattttggtgaTAAACACGGGGGATGCGAGTGGATGTTGTGAGGAAGAGAAACGTTCTTGAGTCCAATCAGGAGCACCGGGGTCCCTGGTAGACAGTGGGGCCCGGGGCCCTGGAGATCTGATGCCAGTCTGAGTGAGTGTGGCCCGGCACCAGCGCGGCGCGGTCGGCAGGACTGCGTCAGTCGCACTCAGCGGGCCGAGAATGGAGACATCCATACTTACAAAAGGTGGCATCTTAATCAACAATCACTCTCTTCTCTTGGACAGCAACATCATTTAGATATTTAATCTGGGATGTGTTTTCGGAGCACAATCTCTTGTCCCCTCTTGCAGCAGACTAGTTTTAGTTTTAGCATCTAAATTTGCTACATTGGCTCCATGCTGCCTTTGATCACGTGAGTAGTTCTGTAATCCATACATGTATTTGATATGTTGAGAACCTATGGTATAAATTAAcctcatcatttattttgaacatataaATAAGTACATGGATAACAGGCTGAGTATGTATGTAGAATATATccctgtgtattttaaatatgcaaaaactTCAGTATAAGGTTCGCACATCATCTACCATAGATTAAATATCTGTTTGTTCCATATGTCCTCAGTCAGACACAACCCCCATCCTCTGTGTCCCGCAGCTGCCAGAGGGAAAGCAGGGCATCACGGGCCAGTGAACCAGATCGGGCAACAATCACTCCATACAGGTGCTGTAAATAAGCGACTCGGTCCCGGGGTCTCAGTATCTGCCCCAGCCCCAGCCACAGCCACATCACTCTGCTGTACGAACATCACGATCACCTGGCTTGTGCTCCAGATACTAGTTACCTTGCTGACCGGTCACACGGCCCTACACCAATCACATGACCAACACAGCCACAGTGTCCATCGCATCGCTTTAGTTACTGAATACAGGGAACGAAGGGAAAACTGCAAAACCTGCAACACCACATTCACCCGTGTTTCTCATCGCCAGCTCCACAGACGGTTTCAGGCCCGGTGAGGAAATGCAGAAGGTTTGATCCAGAGGCCGACAGCAGCCCTCAGGGGACAGTCTCTGGGTCCACAGACATTAAGCCACGAGTACAAACATGTGAGACACTGTCTGGGATCTAAGACATGGCTCTcaagcccccccacccccctggtCTGAGCAGCTGTTTAACTGGATGAGTTTCATACTTTTTTCTAGACTGAAAATGGTGGTATAGGCATTGCACCCCGAGTCCCACTCGCCCCCCCAGGGAAACAACGGGGCTGTCGAGTGTCGGCACTGATCCCTACGACACACACAGGCACGACAACGCACAActgactacacacacacaatcgcaCACTGCTCTATCAGTTTTCCATCCCCAACACCAAGGcttcattttgtctttgaacCTCCTATTCGGTCAACAAGCTGACGGCTAATATAGTCAAACAGTTACacagcagagagaaacagaaggtCATCCTAACCTCGCCATCAGCACACGAGCCCGGACCCACGGACACGAGCCCGgacacacagactctcacacCAGCCTCTCTCCCCGGCACACCTACACAGACCGGCATTCGGCTActataaatcattttgttttgttactgaaaggctttgcaaacaacacaaagatgTTGCATCAGTCGGACGCACTGTGAAAAAAGTGAGAGGATGGGAATGATGTAATACGTAGCAGAGGACCTCAGAGAAGTAAAAACACGCCAGTGACCTCAGCAGAGTGAGGGGTGAAAGGTCACGAGAGCAAGTTCCATCCTGTGACCGTGACCGAGGACATGCCTCCCATTCGCAGCCTGCGATGTGGAAACGCACCTGGATACACAACCTGAGGCTCACACTGCAGACGCTCAGACCGGTGTGTGCGTCCAACATGTGCGAGTCTGTGTGTGGGAGAGCGTATCACTGCGACACAAACAGAAACGCACAGCGCAGACGGTTCTTCTCTCGTGCCGAGCCGGGCTCTCGAGGGTCTCCGTGTTCTCAGTCCGGTTTAAAGCATCTGTGATGGAAATCACTGAGTGAAATTCTCTATTGTGtcatttgtttctctgtttatttatttgttatggtTACAATCTGGAGgggaaaacaactgaaaatgaaagctatttttttttttaaattgagaaaaataaagtcaaatcaCAAGCAGGACAAAGACTTGAGGGTTCGAGGGAGATTGTGAAGCAGGATCGGGGTTATAGAGCAGCCGAGAGCGACACACGAGTACACAACGAGACAGTGGAGGACGGCGTAGACGTCCCGGGGACAGAGGGCAGCGGACAGCACCGGACCGATGCAGCGCAGAGGGGACGAGAGGGAACCACAGCACGCCACACGCAGGAGAGAAAGAACGgaaggaagacagacagacagacagaaagaaagatataGTCTTGCAGAGCTGATGGCTGAAGGCGGACACACCTGGCTGGACTGCAGCGTCCTACTTTTCTAGCTCGAAGACAAGTGATCGGATGGTGAGTGTCAGTGCagcacaaactctctctctctcgggggACCGTGTTCAGGGCCACAGTCACTTCTCCGCTGGCCGTGGCGAgcaatccctctctctcactttcctGCAATACTTTTTCGATTATGCGATCGACACGCCCTCGGTTCCCGGCCCCTGGATGTGGCCCTTCGTCCGTCCAGTTATAGATACACAATGACAACACACTCCAGCAGCCGTCGCAGGTCTGAGTGCTTCAATAGCCTGTACACACGCTTGAGTAATATAGTGATATGGGCACTACAGTGTTACCCTAGAAAGACAGATCGGTGAtcgtgttgtgttgtgttgtgttgatgaGAGGCAGTGTAATAAACCATCTGAGTCCAAGCACTTCACCGTTATGTACAAATGTTCAAAGTGTCCTTGGGAAGAGGTCTGAGGAAGCGGATGTTGCGCTGCACCCCCCCGGGGGCTGTTTTCTAACACAGCGGCCAAAAAAActagaggaaaacaaattaaaaaaagtcaaaaagaaacagaaaaagaaggaaaatgaaaaagatctACTTGTTTACGTCACCCAAACAACAGAGGATGCTATCTTTGGTCACAAAATTAGCAAACAGGAGAGAAGAGTTAGAGGAAAAACCGAAACAAACCaaatacagctttaaaaaacaaaaatgaaagaggAGTGAAAGCGGGGAAATAACGAAATGAAACGAGGAACTGTGTGTCCCACCGCAGCGCCGCCGGGCCGGGCTGTGGAGGGGCGGGGGGTGGGTCCGGACCGGACCGCGGTGCACACGGGGGGCGCGGCGCGTCACTCGGGCTGGTCGCTGCAGAGGCGGCGGAGGAGCCGGTGCAGGTCGTGCTGCAGGGCGTCGTGCCGCAGCGCCTCGGGGGCGTCGTCCAGCTGCTCCAGGTGCACCTGCTTCCCCTCGGCGCCGCGGACCACCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118233 lncRNA downstream 301881 32345250 ~ 32346583 (-) True G94791
TU118171 lncRNA downstream 451858 32192183 ~ 32196606 (-) True G94747
TU118071 lncRNA downstream 819664 31828459 ~ 31828800 (-) True G94665
TU118061 lncRNA downstream 906805 31741224 ~ 31741659 (-) True G94655
TU118024 lncRNA downstream 1026086 31621600 ~ 31622378 (-) True G94622
TU118408 lncRNA upstream 3346 32656030 ~ 32661641 (-) True AMCG00018020
TU118424 lncRNA upstream 137095 32789779 ~ 32790688 (-) True G94927
TU118438 lncRNA upstream 195582 32848266 ~ 32848466 (-) True G94936
AMCG00018021 mRNA downstream 42714 32601189 ~ 32605750 (-) True AMCG00018021
AMCG00018016 mRNA downstream 169612 32461594 ~ 32478852 (-) True AMCG00018016
AMCG00018015 mRNA downstream 218899 32425025 ~ 32429565 (-) True AMCG00018015
AMCG00018008 mRNA downstream 260778 32381550 ~ 32387686 (-) True AMCG00018008
AMCG00018009 mRNA downstream 266975 32380512 ~ 32381489 (-) True AMCG00018009
AMCG00018020 mRNA upstream 5745 32658429 ~ 32665115 (-) False AMCG00018020
AMCG00018023 mRNA upstream 27903 32680587 ~ 32684608 (-) True AMCG00018023
AMCG00018025 mRNA upstream 35697 32688381 ~ 32690871 (-) True AMCG00018025
AMCG00018024 mRNA upstream 42276 32694960 ~ 32713623 (-) True AMCG00018024
AMCG00018022 mRNA upstream 114561 32767245 ~ 32776080 (-) True AMCG00018022
TU118334 other downstream 42713 32602918 ~ 32605751 (-) False AMCG00018021
TU118287 other downstream 192054 32455085 ~ 32456410 (-) True G94835
TU118217 other downstream 353031 32294020 ~ 32295433 (-) False AMCG00018007
TU118225 other downstream 372092 32271694 ~ 32276372 (-) True AMCG00018004
TU118224 other downstream 384933 32262776 ~ 32263531 (-) False AMCG00018000

Expression Profile