RNA id: TCONS_00010741


Basic Information

Item Value
RNA id TCONS_00010741
length 3013
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_004733
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25312018 ~ 25430371 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAATAAAACTCTCAAACAAAACTCTGTCCACAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGTAGTGAAATTACATATCAATCTAAACAAACCTGAGTGTTAATTAGTCTGAAGGTTTTGTGAGAAATAATATGCAATTATGATTCtcatgtttgttattttaacgtctgaatattatattactatattttCTGCAAATCAAATTGTTAGGTGAGTGAGGGGGCCTCCTGTAACTTGCAGGACCCTACACACCTATGCATAGTCCGCGTGTAGGGTAGAGAGGTAACGGAAGAGGGAGATGCGCAAATAGCATATTATGGAACTAAGGCAAGATGCACATATCAATCTTGCCATAGTCTGTCAGATAACCAACAGTACAAAATTGGTTAAACTGATAACGATTAATCTTTCTTGTCTGCATCGTAATGCACTGTACAAAACTGTTATCTCACTTACTTTTAATGAGCAATTGCACTCCCAAAGAGTGAGCTCATGCATCCAAAAACCACTGCATGCTAATTGCGTTTTTTCTACATTTTCTGAGCTCCAAATAAACGATTATGTATgaaaaaaggcccacagtggGCCCATTTAAGTGTGCTTTTAAAGCCCCCAGTGGCTTCTTTTCTTTTAAACCCCATTTCACAAAGTTGCACACTATTTCCACGAAACATGTCATTCAACTTGGAAAACTTAGCAAAATGTTGTGAGCCAGTCTGAGTTTGAAAGTGACCCAGGCCTACATGAGTGGCCAGACGGATGTCTCTTCTCAGTAAAAGACAGTTGACAGCTCATCTGGAGTTTGCCAAAGAGACACTTGCAGAATTCACAGACCATGAGAAACAATATTCTGTGGTCTGACGAAACAAAGATTGAACCCTCTGTCTGGAGGAAATCAGACACCGATCATCACCTAGCCAATACATCTCCACACTGAGCATGGCGGTGGCCGTATCAGGCTGGGGGTGTTTTCAGCATTAGGAACTGGGAAACCAGTAATAATCGAAGGAaatatgaatgcagcaatgtgcaGAGACAAATTTAATGAAAAGCTGCTGCAAGGTACTCTGGACTTTAAAACTGGAATAATGGTTCATCTTACAACTGCACAACAACCCTAAGCACACAGCCAAGATGGCAATGGGACAACTCTGCGAATGTCCTTGAGTGTCCCAGCCAGAACCCAGACTTTAAccatattgaacatctctggtAAGATCTGAAATTGGATGTGCATCGATGCTTCCCTTCCAAAAATAGTTGTGCCTAGATTGTAACTTGTAGCACTTAAAAAGACGAGGCTGTAATTGGTGCTGAAAGGCTTCAGCAAGGAACTGAGTAAAAGTTGTAAATACTTATGcgtgtgttatttttttatatatctaaacCTAATAACTGGTTTGGCCACCCATAGCAGGAACAAATGCAATCAAGCATTTTCAATAACTTGCAATGAGTCTGTTACAGCACTGTGAAGGAATTTTAACCCACttatctttgcagaattgttgtaattcagccacattggagggtTTTTGAACATTATCCACCTTTTTAAGATCATGCCAcagctcaattggattcaggttagggctttgactaggccactccaaaatcttcattttgtttttttcagccattcagaagtggacttgctaatgaggatcattgtcctgctgcagaacccaagttCGTTTCAGTTTGAGGGCACTAACAGATGACATTCTCTTTCAGGATGATTTGGTAAAGAGCATAATGGTTTAATTTATCACAGTATGTTCTCCAGGTCCTGAAGCAGCAATTCAACACCAGACCATCACATTACCATCACCACCACATTTTACTGTTGGTATGATTCTCTTTTTCTGAAATGGGGTGTTACTTTTGCTCCAAACAAAATGGGACACACATCTTCCAAAAGTTCAACTTTTCTGTTGTCAGTCCATGGAGTATTTTCCTAAGAGTCTTGGGGGTTATCAATATGCTTTTTTTGGCAAAACTGACACAAGCTTTTATGTTCTTTTTGGTCAGCACTGATTTTTGTCTTGGAACTCTGCCCATGCAAACCATTTTTGCCCAGTTGTTCTTATgctggagtcatgaacactcaccttaactGAGGCAAGTGAGGCCTGCAGTTCTTTGGATGTTGTTTGTGGTCCCTTGAATGAGTTGTAGCTGCACTCTTGGGGTAATTTTGGTCGGATGGCCACTCCTGGGAAGGTTCTCCACTGTTCCATGTTTTTGCCATTTGTAGATAATGGCTCTCACTGTGGTTCGCTGCAGTCCCAAAGCTTTAGAAATTGCTTTATAACCTCTTCCAGACTGTTGAATCTCACCACTGTTGAAttgttttctttctcatttgtgtttgaatttctttggatattggcatgatgtctagcttttgaggacCTTGCTCTACTTCACTTTGTCGGACAGGTCTTATTTAAGTAATTGTGAACAGGTGTGGCAGTAATCTGGCCTGGGTGTGGCTAGGGAAATTGAACACAGTGTGATAAACCAGAGTTATGTTTTAATTAACACAATTTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009371 lncRNA upstream 167550 25201543 ~ 25214727 (+) False XLOC_004731
TCONS_00010936 lncRNA upstream 167550 25205531 ~ 25214727 (+) False XLOC_004731
TCONS_00010937 lncRNA upstream 167550 25210011 ~ 25214727 (+) True XLOC_004731
TCONS_00009368 lncRNA upstream 307157 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00009377 lncRNA downstream 43035 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010742 lncRNA downstream 112815 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00010940 lncRNA downstream 1099762 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010942 lncRNA downstream 1200053 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 1200053 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009375 mRNA upstream 97767 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009374 mRNA upstream 115146 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009373 mRNA upstream 115148 25223843 ~ 25267129 (+) False XLOC_004732
TCONS_00009370 mRNA upstream 271303 25097754 ~ 25110974 (+) True XLOC_004730
TCONS_00009369 mRNA upstream 289707 25085751 ~ 25092570 (+) True XLOC_004729
TCONS_00009378 mRNA downstream 43036 25432627 ~ 25485309 (+) False XLOC_004734
TCONS_00009379 mRNA downstream 77969 25467560 ~ 25487244 (+) False XLOC_004734
TCONS_00009381 mRNA downstream 211094 25600685 ~ 25603341 (+) True XLOC_004736
TCONS_00009382 mRNA downstream 250889 25640480 ~ 25770232 (+) True XLOC_004737
TCONS_00009384 mRNA downstream 386143 25775734 ~ 25830268 (+) False XLOC_004739
TCONS_00009372 other upstream 130490 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 816685 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 963937 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 1036784 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009353 other upstream 1167760 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009380 other downstream 78721 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009383 other downstream 258536 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 1745278 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 1767352 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 1829402 27218993 ~ 27220589 (+) True XLOC_004765

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU457309 True 433 TUCP 0.45 1 CI01000246 63188 ~ 63620 (+)
rainbow trout (Oncorhynchus mykiss) TU96006 True 1337 TUCP 0.45 1 NC_048565.1 77478603 ~ 77479939 (-)
eurasian perch (Perca fluviatilis) TU194309 False 537 lncRNA 0.38 3 NC_053125.1 18115976 ~ 18122495 (+)
striped catfish (Pangasianodon hypophthalmus) TU194309 True 2441 lncRNA 0.39 2 NC_047604.1 12384927 ~ 12387390 (-)
mexican tetra (Astyanax mexicanus) TU79494 True 3225 lncRNA 0.36 2 NC_035902.1 45195151 ~ 45198764 (-)