RNA id: AMCG00018038


Basic Information

Item Value
RNA id AMCG00018038
length 708
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00018038
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25688 ~ 29686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGTGGGACGGATTTATGGGGCAGCCCTGAGCAAGAAGTGGGGTATGCCCCAGAGATGTCTGACAGACCATGAGATCCTCTCTCAATCCATGATTTTCCTTATAGCTGGGTATGAGACGACCAGCACCTCCCTTTCCTTCCTTGCATATAATCTGGCAACCAACCCAGACTGTATGAAGAAACTGCAGGAGGAGATTGATGAAACCTTTCCAGACAAGGTGGAATATCATGCCTGTGTAACGTATGAGGCATTGATGCAGATGGAGTACCTAGACATGGTCATTAGCGAGTCTCTCCGTATCTACCCCCCCGCCCCGCGCCTAGAGCGAGCCTGCAAGAAGACTGTGGAAATCAATGGGGTGACAATCCCCAAGGGACTCGTTGTCATAATCCCCGTCTACACTCTGCATCGCGACCCACAGCACTGGGCAGACCCTGACCTTTTCAAGCCTGAGAGGTTTAGCAAAGCTAACAAGGAAAGTATGGATCCCTATGCATACATGCCGTTTGGAGTTGGACCTCGCAATTGTGTTGGCATGAGGTTTGCCCTTATGATCATTAAAGTGGCAATTGTGCGGCTGCTTCAGAACTACAGCTTGGAGACCTGCAAGGAGACTCAGatcCCTCTTGAACTAAACATGATGTTTCAGCCAAAACCCATCACACTGAGACTCACCTCAAGAATTTGCACAAAAAGCCCCTAA

Function

GO:

id name namespace
GO:0009410 response to xenobiotic stimulus biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142757 lncRNA downstream 439102 468788 ~ 472124 (+) True G114018
TU142803 lncRNA downstream 523524 553210 ~ 553504 (+) True G114056
TU143011 lncRNA downstream 1133206 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 1237154 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 1260869 1290555 ~ 1291851 (+) True G114253
AMCG00018044 mRNA downstream 362039 391725 ~ 418680 (+) True AMCG00018044
AMCG00018045 mRNA downstream 399367 429053 ~ 430631 (+) True AMCG00018045
AMCG00018046 mRNA downstream 410504 440190 ~ 445050 (+) True AMCG00018046
AMCG00018043 mRNA downstream 435819 465505 ~ 467994 (+) True AMCG00018043
AMCG00018051 mRNA downstream 460433 490119 ~ 499466 (+) True AMCG00018051
TU142799 other downstream 545574 575260 ~ 579704 (+) True G114053
TU142800 other downstream 545574 575260 ~ 579704 (+) False G114053
TU142895 other downstream 747697 777383 ~ 794790 (+) True G114123
TU142941 other downstream 841659 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 1190093 1219779 ~ 1220216 (+) True G114219

Expression Profile