RNA id: AMCG00018040


Basic Information

Item Value
RNA id AMCG00018040
length 1368
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00018040
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9689 ~ 22355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTTCTTCAATTTTGATATGGACTGTTTCAAGAAATATGGACGAATGTGGGGGTTTTATGATGGCAGGCAGCCTGTATTAGCTGTCATGGACACAGAAATGATAAAGACAATCCTGGTAAAGGAGTGTTATTCCCTCTTCACCAACAGAAGGAATTTCCGCCTCAATGGCCCCCTGTACGACGCGGTCTCCATCGTGGAAGACGAGGACTGGAGGCGGATCCGCAGTGTGCTCTCCCCGTGTTTCACCAGTGGACGACTGAAAGAGatgtttCCAATAATGAAACACTATGCTGACAACCTGGTACAACATGTACAGAAGAAAGCAGACCAGAATGAAGCTGTTCAAGTCAAAGAGTTGTTTGGTCCATACAGTATGGATGTTGTTACCAGCACAGCCTTCAGTGTCAACATTGACTCTATGAATAACCCCAGTGACCCCTTTGTGACCAACATCAAGAAAATGCTCAAATTCAATTTTCTAGACCCTATATTGCTAATCATAAGTCTCTTCCCCTTTGTTTCTCCATTGATGGAGAAAATGGAATTTTCTCTATTTCCAACATCAgtgacaaattatttttttgactCCCTTCGGAAAATAAAGACTAAACGCCAACAAATGGTTCATGATAATCGAGTAGATTTCCTGCAACTGATGGTCGATTCTCAGGTTCCAGATAAAGTGAATAACACCAAAGCTGAGCAGGAGTCTGTTAAAGGTCTGACAGATCATGAGATCCTCTCTCAGTCcatgattttcatttttgctgGCTATGAGACGACCAGCAGCTCCCTTTCCTTCCTTGCATATAATTTAGCCACCAACCCAGACTGTATGAAGAAACTGCAGGAGGAGATTGATCGAACCTTTCCAAACAAGGCCCCTGTGACGTACGAGGCAGTGACTCACATGGAGTACCTGGACATGGCCGTGAATGAGTCCCTAAGGCTGTACCCCCCCGCAGCCCGAGTGGAGAGGGTCTGTAAGCAGACAGTCAAGATTGGTGACGTGACAATTCCAAAGGGAATGGTCATCATGATTCCATCCTATGTTCTTCACCGCGACCCTCAGCTTTGGTCAGAACCTGAAGTCTTCAAACCAGAAAGattcAGTAAAGCCAACAAAGAAAGTACAGACCCCTATGCATTCTTACCATTTGGAGCAGGGCCCCGGAATTGCATTGGAATGAGGTTTGCCATCATCTTAATGAAACTCGCCATAGTTCAGATTCTCCAGAACTTCAGCATCATTACTTGCAAGGAGACAGAGATCCCACCTGAGCTGGATATTCAGGGATTCATTGGACCTAAAAAGCCACTGACACTAAAGTTCAGACAGCGCAGTTCATACCGTGCAGAGGAATAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142769 lncRNA upstream 446562 468917 ~ 472124 (-) True G114030
TU142784 lncRNA upstream 475972 498327 ~ 499518 (-) True G114044
TU142932 lncRNA upstream 774638 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 856956 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 879965 902320 ~ 903843 (-) True G114179
AMCG00018041 mRNA upstream 15327 37682 ~ 43087 (-) True AMCG00018041
AMCG00018039 mRNA upstream 22960 45315 ~ 128374 (-) True AMCG00018039
AMCG00018042 mRNA upstream 172666 195021 ~ 199235 (-) True AMCG00018042
AMCG00018048 mRNA upstream 450741 473096 ~ 481320 (-) True AMCG00018048
AMCG00018047 mRNA upstream 461682 484037 ~ 489046 (-) True AMCG00018047
TU142760 other upstream 418730 441085 ~ 442424 (-) True G114021
TU142989 other upstream 901152 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 901152 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1962794 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1984551 2006906 ~ 2067584 (-) False AMCG00018111

Expression Profile