RNA id: AMCG00018044


Basic Information

Item Value
RNA id AMCG00018044
length 4006
RNA type mRNA
GC content 0.59
exon number 24
gene id AMCG00018044
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 391725 ~ 418680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTGGCAGCTTCCGCCAGACTCGCTGTGCTGCGCCGTGGGGCTGCTGGAGCGGGGGGGAGGGGTGGCACAGCAGGCGATGGAGAGCTGCTCCTCGGAGAtggtgaaggaggaggaggaggcgctGTGGGAGAACGTGGAGAGCAACCGCTACATCCTCAGCCGCTACATCAACCCCAACAAGCTGACCCCGTACCTGCGGCAGTGCAAGGTCATTGACGAGCAGGACGAGGATGAAGTGCTCAACTCGTACATGCTGGTGTCCAAGGTCAACAGGGCAGGTAGCTCACCAGAAAAGGGTCTGTTGAGGGTCAGCGTCCTGAAGGTGGCCCAGATCTTGCAACTGCAGGTGCAGTCCAGCCTCAGGGGGCTGAGGGCCGAGGTTTCGTCCATTGACTGGCCACAGTCAGGCCAGGCAGTGCCAAAGACACAGAATCAGGGCAGACAGGTGCACTGGTGGGATACGGCCTCGTTCCCGCAGAACAGAGGGCGGCTGCTGGACATCCTGCACACTAAGGGCCAGCGCGGGTACGTGGTCTTCCTGGAGAGCCTGGAGTTCTACTACCCTGATCTCTACAAGCTGGTGACTGGGAAGGAGCCCACGCGCAGGTTCTCCACCATCGTTGTGGAGGAGGGCCACGAGGGCCTGACGCAGTTCCTGATGAACGAGGTGATCAAGCTACAGCAACAGACTAAGGCCAAGGACGTGCAGCGCGTGGAGATACTGAGCAAGAACCAGACGCTGGAAGACGAGCACAAGAAGCTGCGGCTGGTCAACCAGGAGCTGCTGACCTTCCAGGAGCGATACAACAAGATGAAGGAGGAGCGGAACAACTGCAACGACGAGCTCATGAAGGTCAAGGATGACAACTACAACCTGGCTATGCGTTACGCCGGGCTGAGCGAGGAGAAGAACATGGCCGTGATGAGGAGCCGGGACCTGCAGCTCGAGATTGACCAGTTGAAGCACAAGCTGAACAAGGTGGAAGAGGAGTGCAAGCTGGAGAGGAAGCAGTCCCTAAAGCTGAAGAACGACATCGAGAACCGTCCACGCCGGGAGCAGATCCTGGAGCTGGAGCGCGAGAATGACAACCTAAAGCTGAAGATCCAGGAGCTGCAGTCCATCATACAGTCGGGGAAACCGCTGCCAGACTCAGAGAAGGCCATCCTGGACATCTTGGAGCATGACCGGCAGGAGGCGCTGGAGGACCGGCAGGACCTGGTGAACCGGCTGTACAACCTACACGAGGAGGTGCGGCAGGCCGAGGAGCTGCGCGACAAGTAcctggaggagaaggaggaccTGGAGCTGAAGTGCTCCACGCTGGTGAAGGACTGCGAGATGTACAAGAACCGCATGAACACCATCATGATCCAGctggaggaggtggagagggagagggaccaGGCTTTCCGCTCTCGAGACGATGCCCAGAACCAGTTCTCCCAGTGCCTGATCGACAAGGACAAGTACCGCAAGCAGATCCGCGAGCTGGAGGAGCGCAGCGACGAGCTGCACATCGAGATCGTGCGCAAGGAGGCCAAGATCGTCAACCTGGAGTCCAAACTGCGCCGGCTGTCCAAGGACGTCAACTGCTTGGACCAGAGCTTGCCTCGAGACATCCCCATGACCATCATCTCTGCAGCTTTCGGCGCACAGGACCCGAAGAGCAACGGGCAGGAGGACGAGTCGGACGAGGAGTCCCCAGAGGACAGTCGCTTCTTTGTTCCCATTGCTGAACCCCGCCTGAAACGCAGGCCCAACCTCAAGGCCCTTACACTCCTGCGTTGCCGGACCGACAGCATCATGTCCACGATCCCGGAGCCGCCGGGGAACGACTCCATCGTCCGACGCAATAAGGAAGGGGAGCACGACACCCTGCCCAGGAGCCTGAAGGACTTTGATTGTGACAGCTTTGATAACCAGGGCATCTGTGATGAAGACCTGGACAGGTTCTCCTATGGTCCGGCCTCGacccactcctcctcctcctcgcacCAGTCCGAGGTGCTGGACTCCTACGAACTGGAGCAAGTCAACAACATCTTCAGGAAGTTCTCCCTTGAGAGGCCCTTCCGCCCATCCGTGACATCCTTCAGCCGGATCAGTGGCACGCTGCGGCCCGTGCAGGAGCTGTCCGTCCCGGGAGACTCGCTGCTGTCCGAGGTCACGCTGCTGGGTGGCAACGACAGCGGCATCTTCGTCTCGTCCGTGCAGCCGGGCTCCAGTGCTGACCGGGCCGGCCTGCGCGAGGGACAGCACCTCCTGCTGCTGGAAGGCTCCATTAAAGGAGAAAACCAGAAGGTCCCTCTGGATGCCTGCACTAAGGAGGAGGCCCACTGGACACTGCAGAGGTGCCACGGGACCATCAAACTGCACTTCAGGTCCAACCATGATGGCTACCGGAGGCTGCTGAAGGAGCTGGAGGATGGCTCCATGGTGTCGGGGGATTCCTTCTACATCCGGGTCAACCTGAACGTCTCGGGTCAGTCGGACAACTGTTCCCTGAGTGTGAAGTGTGACGACATCGTGCACGTGCTGGACACCCGGCACCAGGACCGCTGCGAGTGGCTGTGCGCGCGGGTCGACCCATTCACCGACAAGGATCTGGAGAAAGGCACCGTGCCCAGCTTCTCCAGGGCTCAGCAGCTGCTCCTCGTGAAGATTCAGAAGCTGATGTGCAGAGGGAGCCGAGACGAGACGGACAACCTGCGCAGCTTGCGGACTACGTTACAACCTGAGGAGTCTCCCCCTGCCCCGGACCCCAAGTCCAGCCCCCGTCTCTCCAGGGCGGGCTTTTTCATTGGGCAGATCTTACAGTTTGTCAGCAGGACTGAGAACAAGTACAAGAGGATGAACAGCTCAGAGAGGGTGCGGATCGTCAGCGGAGGGACCTGCACGATCCCGAGGCCCAGCTTCGAAACCGTGAAGCTGGATGCGGCAGACTCGGACTCTGAGAACGACCTGAACAAGAGCCTGAACCTGATCCCCTACAGCCTGGTCACCAAACACCACTGCCAGCGCAAGAGGCCCGTCCTCTTCGCCCCCAACGCGCTCGCCAAGACCATCGTGCAGAAGTTCCTCAACCTGGGCGGGGCCATGGAGTTCAACATCTGCAAACCAGACATCCTGACCAAGGAAGAGTTCCTGCAGAAGCAGAAGATCGAGCCGATCATATATTCCAAGGAGAAGCACGCCAACACCTATGAGTGCATCACCACGGAAAACATCGAGGCTGTCGCTGCCAAGAACAAACACTGCCTCCTGGAAGCTGGGCTCAGCTGCACAAAGGACCTGATCAGAAGAGAGATCTATCCCATCGTCATCTTCATCAAAGTGTGTGAAAAGAACATTAAGAAGTTCAGGAGGCTGCCGTTTAAGCTGGACTCCGAAGACGAGTTCCTGAAGATGTGCCGGGCGAAGGAGAAGGAGCTGGAGGCGCTGCCCTGCCTCTACGCCTCGGTGGAGGCCGACTGCTGGAGTGGAGTGGAGGACCTGCTCAAAGTCATCAAGGACAAAATCCTGGAGGAGCAGAAGAAGACGGTGTGGATCGAACAGGACCTCCTGTAGCCGCGGCGGCCGTGCAGGCGAGAGGACGTCAGGGGTGCGGCTGAACTGGGGAAAGGCAGCAGGGGGTTTCAACAgggaagggtgggggggttgttacCTGTTGCTTCTGCTGGGCCTGGCTTTCTGACTGAGGGGGAAGTTGGTGAACTCTGCACTGAGATGCACAGGAAGTGAGTGTGCCACAGCTGAGCGCAGCCAGAGCGCCTGAGCGCAGCCAGAGCGCCGGAGCTCCGCTGACTTCCACACAACCAAGGACCAGGTCTGAGCTGTGTGCCAAGGGGAGAGCTCTCCACCGCCCAACACCGCAATCAGCCGAGGATGCCGGGCGGCGAGGGGAGTGGATGCTGCTGAGAGGAGAGGGACGTTCACTGAAAATCTGAGACATATTTGTaccaaaatattttgcaattaaactTCACCCCGTACCTAAGAG

Function

GO: NA

KEGG:

id description
K07367 CARD11; caspase recruitment domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142757 lncRNA downstream 50108 468788 ~ 472124 (+) True G114018
TU142803 lncRNA downstream 134530 553210 ~ 553504 (+) True G114056
TU143011 lncRNA downstream 744212 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 848160 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 871875 1290555 ~ 1291851 (+) True G114253
AMCG00018038 mRNA upstream 362039 25688 ~ 29686 (+) True AMCG00018038
AMCG00018045 mRNA downstream 10373 429053 ~ 430631 (+) True AMCG00018045
AMCG00018046 mRNA downstream 21510 440190 ~ 445050 (+) True AMCG00018046
AMCG00018043 mRNA downstream 46825 465505 ~ 467994 (+) True AMCG00018043
AMCG00018051 mRNA downstream 71439 490119 ~ 499466 (+) True AMCG00018051
AMCG00018050 mRNA downstream 82862 501542 ~ 513021 (+) True AMCG00018050
TU142799 other downstream 156580 575260 ~ 579704 (+) True G114053
TU142800 other downstream 156580 575260 ~ 579704 (+) False G114053
TU142895 other downstream 358703 777383 ~ 794790 (+) True G114123
TU142941 other downstream 452665 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 801099 1219779 ~ 1220216 (+) True G114219

Expression Profile