RNA id: AMCG00018048


Basic Information

Item Value
RNA id AMCG00018048
length 1503
RNA type mRNA
GC content 0.68
exon number 7
gene id AMCG00018048
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 473096 ~ 481320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCAGCTCCGCCGGGGCCAGGAGTACTGCGTGGGCCCCCGGGCGCTGAGGGAGGCTCTGGTCTCCCGTGATGAGGCGCTGAGGGCCCTGTATGGCCGCTCCTTCTCCAGTACCGAGAGGCTCTTCCTGTCCGAGGCCTACAACCCCGCTAGGGCGCTCTTCAGGACCCTGTTGATCCGGACAGCCTTTGATTGGCTCggaGGTGGAGCGAAGGCAGTGTTGGTTGTGTTGTCAGATGTGGCCGCGGAGGGGCTGGGGCAGGAGGTGGTCTTCTTCCTGGACGAGCTGAAGTCGTACCTGGAGGCCTTCTTCCCGGGGCTCAGCGTCCGGTTCCTGCCGTCCATCTCCTCGACTGACATCAGGTATGGTATCCTGAGGCACCTGAAGAGGCTGAAGCCACAGGACGCGCTGTGTGTGGTGGGCCTGACGTTCCACGACCTTTACCCCTGCGACAGCTGGAACTACACCTTTGGGAAATCGGCCAGCGAGATGGGTCAGTGTCACGTGGCCGGGCCGGGCTCTGCTGGGTCAGTGTCACCTGGCTGGGCTCTGCTAAAGCGCCGCACCCTGCTGGCGGTGGGGGTCTGCAGCTTCTCAAGGTTTTCCGGGGGCTCAGTGGAGGAGCCGAGCGTGGGGGAGGCGGACCGCAGCGCCGGGGGCAAGGAGGAGCGTGGGCGGCTGCTGGACTTCTCCCTGAGCGACCTGCTTCAGTGCTGCAAGgtGCTCAGTCACGAGGTGTGCCACCTGGTGGGATTGCAGCACTGCCGCTGGCTGCGCTGTGCCATGCAGGGGGTGACCAGCCGGGACGAGCTGTACCTGAGACCTGCGGACCTGTGTCCTGTCTGCCTGCGCAAACTGCACCTTGCCCTGCCCTTCTGCCTCGTAGAGCGCTACCGGcgGCTGCAGGCCTGGTGTCGCAGCGTCTGCCTCTCTTGGGGCCCTCAGGGGGGCAGCGGCCGTGTGACCTCAGAGGACCCCCTGCTGTTCAGCTCGGACTCGGGTGTGTCCTGTGAGAACCTGTCCTTGTCGGCCGCCCTGGAGCCCAGCAGCCTGGAGACGGACAGCCGGGAGGCGTCCCTCGCTCTGGACGGGGAGGAAGAGGGGCGCCCCCCGACCGCCGCCTCCGCCTCCACCTCCGCCTCCGCCTCCGCCTCCGCCTGGCCCTGTCCCCCCCAGGAGGAGGTGAGGGTCCCGTCCCAGTCACTTGCCACCCCCCTGCAGGACTACGCCTCGTGGCTGGACTCCTGCATCGCCACCCTGCAGAGGGGAGGGGACCCGGAGGACGAGCTGTCCCGGCTGGACGGGCTGGTGGACGCTCTGCCCCCCCCCAGGGCCCCCCTGGACCGGGCGCCCGCCCTCAGGGTCTCACTTGAGCCCCCCCGGCAGGACCGGCGGCTGAGGACTTATAGCCCCACACAGCGCCGCTCGGATGGGTCAGCCGGCTCCTCCTCAGCGCGGTCGGCGGGTGCGTGTGCCGGCCCTGCCTGCCTCGATCGCTGA

Function

GO: NA

KEGG:

id description
K06974 amzA, AMZ2, AMZ1; archaemetzincin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142769 lncRNA downstream 972 468917 ~ 472124 (-) True G114030
TU142784 lncRNA upstream 17007 498327 ~ 499518 (-) True G114044
TU142932 lncRNA upstream 315673 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 397991 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 421000 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 431911 913231 ~ 913641 (-) True G114183
AMCG00018042 mRNA downstream 273861 195021 ~ 199235 (-) True AMCG00018042
AMCG00018039 mRNA downstream 344722 45315 ~ 128374 (-) True AMCG00018039
AMCG00018041 mRNA downstream 430009 37682 ~ 43087 (-) True AMCG00018041
AMCG00018040 mRNA downstream 450741 9689 ~ 22355 (-) True AMCG00018040
AMCG00018047 mRNA upstream 2717 484037 ~ 489046 (-) True AMCG00018047
AMCG00018054 mRNA upstream 55358 536678 ~ 537994 (-) True AMCG00018054
AMCG00018056 mRNA upstream 65466 546786 ~ 551240 (-) True AMCG00018056
AMCG00018055 mRNA upstream 77202 558522 ~ 565582 (-) True AMCG00018055
AMCG00018063 mRNA upstream 98580 579900 ~ 590822 (-) True AMCG00018063
TU142760 other downstream 30672 441085 ~ 442424 (-) True G114021
TU142989 other upstream 442187 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 442187 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1503829 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1525586 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1800380 2281700 ~ 2288862 (-) True G114430

Expression Profile