RNA id: AMCG00018049


Basic Information

Item Value
RNA id AMCG00018049
length 3469
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00018049
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 516536 ~ 520955 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcatCTCCCAGGCTTCCTCACATCCAAGTTGTCATCCTGTCAGTTGAGCTCCAGAAGCGGATGGCTGGGTTTCCTGGGCTCTCAGACTGGCACGATGGTTCCTCCCGGGGGGCAAAGATAGAACCGGAGAGTCGAGATACAGAATGGAAGAAGAAACCCCTTAAAGGACTGGATACGATGGGGAAGTCAAGACTTTTTCGCATCTCCCTGATCCTGGGCTCCCTGTTCATGATCCTGCTGATCATAATCTATTGGGACGATGTGGGAGCCACCCATTTCTACCTTCACTCCACCATGTCGGGGCCTCAGTCTTCGCACCGGCCCTCAGAGAGCCACTCCGTCCCCAAACTCAAGCCCGACAGGGACAAGGAGCCGACCTTCCTGTCGGACATCGACGCATTCATCAACCAGTTCCTCGAGGCCACCTCCGAGCCCAGCGCGCTGCCCAGGGCGGACAGCAGCCAGAGGGCGTCGCAGGAGGCGTCGGGGGAGTCCAAGCGGCCAGAGGAGGAGCGCTACGTGCCACCGCGCACCTGGAAGGTCCACTTGACGCCGATAACACTGGAGCGGACGCAGGCgcaggagaggaggaagcagctgctgcagcagatCTGTCACAACTCCTCCCTGGACTTCCCCGGGAAGAACAGGACCTTCGACGACATTCCCAACAAGGAGCTGGACCACCTGATTGTGGATGACCGGCACGGCATCATCTACTGCTACGTGCCCAAGGTGGCCTGCAGCAACTGGAAGCGCATCATGATCGTGCTGAGCGAGAGCCTCCTGAACAAGGGCGTCCCCTACCAGGACCCCCTGGACATCTCCCCCGAGGACGTGCACAACAGCAGCCACCACTTCACCTTTAACAAGTTCTGGAAGCGCTACGGCAAGTTCTCCAAGCACCTGATGAAGATTAAGCTCAAGAAATACACCAAGTTCCTGTTCGTGAGGGACCCCTTCGTCCGGCTCATCTCCGCCTACAGGAACAAGTTTGAGCAGGCCAACGAGGACTTCTACAAGGACTTCTCCGTGGTGATGCTGAAGCGCTACACCAACCACAGCGACCCGCCCGCCTCCGTGGTGGAGGCCTTCGCAGCCGGCATCCGCCCGTCCTTCTCCAACTTCATCCAGTATCTGCTGGACCCTCAGACGGAGAAGGAGATGCCCTTCAATGAGCACTGGAAGCAGATGCACCGTCTCTGCCACCCCTGCCAGATCAACTACGACTTCGTAGGCAAGCTGGAGACGCTGGACGAGGATGCCGAGTATCTGCTCCGGCTTCTCCGTGTTGACAACATCGTCCAGTTTCCCCCAGGCTATCGCAACCGGACTGACAGCAGCTGGGAGGAAGACTGGTTTGGGAGCATCCCCCCGCAGTGGAGGAGGGAGCTGTACAATCTGTACGAAGCGGACTTCACAATGTTTGGGTACTCGAGACCCGAAAAACTCTTACACGAATAATGgcctttaaaaggaaaaaggtgtttttaaaaaggacatTCTTTTGTAACCAGATCTTCCTGTATTCATGTCTTTCTGTCCTGTGCTGCCCTGTCCTTGAGGGTCTCGAAGAAATAGGAATAGGAAATGGCAGGACTCGCTTTATATCTGCTCTGTGTGGGTCTCAGTCTGACTCTGCATGTGATAGTTTTTAATGAATCTTGCAAgatacttgtttttattttccctcttctcatgtattttatttagaacaACGCAAAAGGGACACAGTGTTTATATCTGCGCTTCGGCAGGAGCGAGCGATTGTGCAATTGAAGTCAGAACGACAACTTCTTACTGTCTGGGggggataaaaagaaaaaaagttacaaatttGTCCAggaaaaggaacattttaatatatttatgtataacaGTAATTGCATATAGGCTTTGTGCGATGTGTTACAATCTGTCTTGGATAAGGATGCTAATCAGTGTGCGTAATCCAGCCAGCCGACATAAGAGAGTCCTTGTTTTGAACACGCAAACACGGGAGTTTGAAACTGTATTTGCTGGGTTGAACAGATTGTAGCAAAACCCCGTCCGGTTTTAAACAGAATGCCTTTTGCAcagaatgtatgtttaaaatctttcagtttaaaaaaaaagacaccacaATTTGTTTCATTACAAATGTGAAGCTGTGTAGGAAATCAAAAGATAggcgtttattttattttccttattccTCGTCAGTGTTATGTTTGCTTGCCATTGACACTCCCAGGAGAGGCCTGTTTTCAGGGCCTGTGCTTTTGTAAGACAGTCCTTAAATTGCCTAAAACTCAGGGGAGGAATAAACAGCCTGAGTTGTGGGACGACAGTGTGGAATCAGTCTCTGGGCTACAGGGCCGGAGGTCTCCGAGAAAAGGAACGTTTTAATGCCAAGACGTATTTTTATAAGTTCATTTAAGATTAAGAAAAAGGGAAATCTTTCTTAAGCaaggaaaagtattttaattagtattaaaacATAGGAGGAGAATGTATGCTGTCATGTGTCAAGTGTTATTAGACTGAGCTTTGGGTTTTGTTGTGTAGAATTGTATGTTTTGTCTTGTATTTGTGTTGGTTGTCTTGGCTCTGTTTTCCACCTCTTTTGCCTAGATCTGTTTTAATGTGGTTTCTTCCCAGCGTCTGCAGGGCTGCGGCCCCGTTGTTGCAGACATTCCCCTCTGTATCGCTCTGTGATAAGAGGCTCACACTCGGCATACAAACAGTGAGGCTCGCTCCTCTCAGTCACACACTATtggcatgattttcaaaaggggtGCGATTGTTACTAGTGTtgttatgatgtatttattagccGCCACCCtaatccaaggtgacttacagtttacacaagaaacattttaaagcattagaAAAGTGCAGTATTACAATCAGCACACAATACAATAAGCGCACAATCTCttacaatgagctaacaagtgttGACAAAACTATAAGTGCTGATATAGTGCGTAAGGAAGCAAGAAGTGACTAGTAAAGCCTGACTCTTATGATCCACTCACTCCATGTGTTGAAAGTGGATTCttgaatatttttataaaaccaTTTGAAATGACTCCATCCCTGTGACCCCCCTGAGGTTTGAGAAAAGGCCACCGTCTTGTTCATCCCCTTTTGAAAATCCGACCCAGCTGGGTCTTCCCTCACGGCTCCGATGCCCAGTCTGGATCTGAGCTGAACCGGGTTGCCTGGGCTGAGTGTGGTGGAGCTGAGATGTTTGACCAAAGACAGACTTCCTGTCCCCAGCGGAGAACAGGTTTGCCAATTCAACTGTTTCACCCCCAGAATTATGTTCGGAGACAAtaagttattatttatgtcaGTATTATTTAATACGTtacaaatgtggaaaagtcatgcaagaatacaaataaagctCACTGCATGGAGTTGGccattacagttttgtttttgtgaatttactaattaaaaaaagtgaacCGTA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04742 CHST12; chondroitin 4-sulfotransferase 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142757 lncRNA upstream 44412 468788 ~ 472124 (+) True G114018
TU142803 lncRNA downstream 32255 553210 ~ 553504 (+) True G114056
TU143011 lncRNA downstream 641937 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 745885 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 769600 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 1012520 1533475 ~ 1534982 (+) True G114274
AMCG00018053 mRNA upstream 2799 513340 ~ 513737 (+) True AMCG00018053
AMCG00018050 mRNA upstream 3515 501542 ~ 513021 (+) True AMCG00018050
AMCG00018051 mRNA upstream 17070 490119 ~ 499466 (+) True AMCG00018051
AMCG00018043 mRNA upstream 48542 465505 ~ 467994 (+) True AMCG00018043
AMCG00018046 mRNA upstream 71486 440190 ~ 445050 (+) True AMCG00018046
AMCG00018057 mRNA downstream 54149 575104 ~ 575385 (+) True AMCG00018057
AMCG00018052 mRNA downstream 57093 578048 ~ 578311 (+) True AMCG00018052
AMCG00018060 mRNA downstream 83375 604330 ~ 609917 (+) True AMCG00018060
AMCG00018061 mRNA downstream 91534 612489 ~ 615795 (+) True AMCG00018061
AMCG00018062 mRNA downstream 102023 622978 ~ 637087 (+) True AMCG00018062
TU142799 other downstream 54305 575260 ~ 579704 (+) True G114053
TU142800 other downstream 54305 575260 ~ 579704 (+) False G114053
TU142895 other downstream 256428 777383 ~ 794790 (+) True G114123
TU142941 other downstream 350390 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 698824 1219779 ~ 1220216 (+) True G114219

Expression Profile