RNA id: AMCG00018050


Basic Information

Item Value
RNA id AMCG00018050
length 3184
RNA type mRNA
GC content 0.63
exon number 18
gene id AMCG00018050
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 501542 ~ 513021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACaccccagacagacagacacacacacacacacaccccagacagacagatacacacacacacgcacacacaccccagacagacactcacacagacacacacacacaccccagacagacactcacacagacacacacacacaccccagacagacacacacacacccacaccccagacagacacacacacacccacacacacccacaccccaGACAGACGAGCTGACACACACCCGCGGACCCCCACTCCCACACGGCTGCACAGAGACCCCGGTCTTATTATGAAGCAGGAAGACTGGCTGCGCCGGACACAATAAAGCCTGTTCAGATGCTCACGTAGTCGTATGGATTGAGACAAAAGTGTGAACgtgagaagaaaacatgaaaacgcTGGCCGGAGAGTCCAAGGACCAGCAGCTCATGCCTGACCCCCGTTGCCTCGTGTCCCCGGCACAGGTGGCGATCCGTATCCGACCCATCAGTGATGCCGAGGTGGAAGAGGGTGCTACGGTCGTGGCCCACAAGGTGGATGATCAGATGGTGGTTCTGATGGACCCCTGCGAGGATCCTGTTGACATCCTGAGAGCGAACCGATCCAGAGAGAAGACCTTCATGTTCGATTTTGCGTTCAACTACACGGCGTCGCAGGAGGATGTGTATGTCGGCACCACCCGGAGCCTGATAGAAGGAGTGATCTCGGGGTACAACGCCACGGTGTTCGCCTATGGGCCGACAGGAGCCGGAAAAACCTTTACAATGCTGGGGACAGACGCCCAGCCAGGGATCTACATCCGCACCTTAAACGATCTGTTCCGGGCCATCGCGGAGGGCAGTGAGGAGATGGACTACAGTGTCTACCTGTCCTACCTGGAGATTTACAATGAAATGATTCGCGACCTGCTGAACCCAGCCTCCGGCTTCCTGGAGCTACGGGAAGATGCCAAGGGTGAAATTCAGATCACGGGCATCACCGAGTTCTCCACCAACAACGCACAGGAGATCATGCAGCTCCTGACCAGAGGCAATAGGCAGCGAACCCAGGAGCCCACGGCTGCCAACAGGACGTCCTCGCGCTCCCACGCCGTGCTGCAGGTCCGGGTGAGGCAGCAGCGCCGCCTGCGGGGGCTGAGCGAGGAGGTGCGTGTGGGCAAGCTGTTCATGATCGACCTGGCCGGCACCGAGAGGGCCTCACAGACCCTGAACCGAGGGAAGAGGATGAAAGAAGGGGCCCATATCAACCGCTCCCTCCTGGCCCTGGGCAACTGCATCAACGCCCTGAGCGACCGGGCCGGGAACAGGCCGCACTTCGACTCTCTGGGAGGGAACAGCAGGACGGTCATGATTGCTCACATAAGCCCCGCCAGCATGAACTTCGAGGAATCCAGGACCACTCTGATCTACGCAGACCGGGCCAAGAACATCAGGACCAAGGTGAAGCGCAACCTGCTCAGAGTGACCTTCCACATGACGCAGTACTCGAGCATCGTGGCCGAGCTACGCAGGGAGATCGAGCGGCTGCAGGCCAAGGTGCAGGACCGGGGCTCGGAGCACCGGAGGGCGGGAGAGAAGGCCGACATCCGcgaggtcagagCCGAGGTGCAGCAGCTCTCGGCACAGTACAGCCGGGGGGAGGTGAGCCGGCTGCGGGAACAACTGGTCAGCGCCTTCCGGGAGCAGATGGAGATCCGCCGCAGCCTGGTGGAGCTGGAGAACTCGAGCATGGAGCTGCACATTGACACGTCGCGCCGCCTGCTCACCATCGCGGACTGGGAACGGGAAAAGGCACGGTGTGCCCGGAAATGGCAGGAGGAGAGGAACACCGAGAAGAGGGACAGAGgcaaggaggaggagagggagagcgggAGCGAGGAGACGGCGGCGCCGGAGCCCCCCGAGGTGACGGCGGCGCGGGAGGAGATTGGCACACTGCTGGCAGAGCAGAGGAGGACAACAGCGCTGAAGGTGGGGACTGATGATGAGTGGAAGGCGGAGCTGGAGGACCGGCTGGCCGGCATGCGGCTGAAATCGTCGAAGGTTGAGGAGCTGCTGCCGCGGCGCATGGCCAGCGAGGAACAGCGCGAGGTCCTCACCCTGCTGTGCCGCGTCCACGAGCTGGAGGTGGAGAACAGCGAGCTGCAGGCCTCGCTGCTAGGCCGGGACACGCGCCGGCGGCACCAGGACTCAGTGCTTCAGCACTACGAGCAGCAGAGGGCGCTGTGCCCCGAGATCATCGAGCAGCAGAGGGCGCTGATCGCCGAGCACAACATCCCCATCCCAGAGCGCCTGCAGGAGTTGTACGCACTGTACCTGCACGAGCTGGAGGAGGGCAGCCTGGAGCAGCTGCTGGCACTACACAACATCAGCACTGTGGGGCTGCAGGACTGGCTGATCCTCTCGGTGGCCAAACAGCTGAATCTGGGGGATTTGCTCACTGATCTGGACCAGGAAGAGCTGAGCCCGAGGACAGAACTGCGGCAGGACAGGAAGCCCTACCCACAGGAGCCGCCGCTCCTTCCTGCCCTCGTCGGGGGACCCGAGGGTGACGCCTACCAGGGGCTCAGATCTGGCTCCAAACCTCAGCCGAGGAGAAGAATGGCCATCCCCCTCCCTCCGCTGATCCAGGCGAGGCCCGGCGCGCCCGGCACCGAAAGCCTGCGGGAGATCGCCACGGGCACCAAGAGCATCGCGGTCATCGCTGCCGAGCGCCGCTCCCGCCTGCAGGCCGTGCAGCCCCACCCGCCCGGCCCGGCTCACGCCCCGGAGAGGAGCCTGGAGGAGGGCGAGAGGGCGGCTTCAGAGCCCCGCCGGGCCCCGGGCTCCAGCTCGGAGAGCCTGGCTGCGGCCGCGCCGGACAAGAGGGTCTCGCTTCACGCCCCAGCCGGCTCCTACCCCCGTGCCAAGAGAGACCCCCGGAGAGTGGACAGGCGGGATGACAAGCTGCGCGATCACAAGAGGCGCTCCCGCTCCTTCGAGGCGAGCGGCCAGCGGAAACCCAAGAGCAGCTCCTTCAGGAACGAGGATGTGGGCAGCGTGTCCGACAGCAGGCTGCTCCGCCCGACCCAAAACTCTAACCATCTCTTCCTGCTGAAGAACTTTgggaccccccccaccccccccgcgGCCAGGATCAAGTACCCTGTCTCCCACCACACAGGCAAGGGGCCGCAGTCTGCAGGGCCACGCTGA

Function

GO:

id name namespace
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142757 lncRNA upstream 29418 468788 ~ 472124 (+) True G114018
TU142803 lncRNA downstream 40189 553210 ~ 553504 (+) True G114056
TU143011 lncRNA downstream 649871 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 753819 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 777534 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 1020454 1533475 ~ 1534982 (+) True G114274
AMCG00018051 mRNA upstream 2076 490119 ~ 499466 (+) True AMCG00018051
AMCG00018043 mRNA upstream 33548 465505 ~ 467994 (+) True AMCG00018043
AMCG00018046 mRNA upstream 56492 440190 ~ 445050 (+) True AMCG00018046
AMCG00018045 mRNA upstream 70911 429053 ~ 430631 (+) True AMCG00018045
AMCG00018044 mRNA upstream 82862 391725 ~ 418680 (+) True AMCG00018044
AMCG00018053 mRNA downstream 319 513340 ~ 513737 (+) True AMCG00018053
AMCG00018049 mRNA downstream 3515 516536 ~ 520955 (+) True AMCG00018049
AMCG00018057 mRNA downstream 62083 575104 ~ 575385 (+) True AMCG00018057
AMCG00018052 mRNA downstream 65027 578048 ~ 578311 (+) True AMCG00018052
AMCG00018060 mRNA downstream 91309 604330 ~ 609917 (+) True AMCG00018060
TU142799 other downstream 62239 575260 ~ 579704 (+) True G114053
TU142800 other downstream 62239 575260 ~ 579704 (+) False G114053
TU142895 other downstream 264362 777383 ~ 794790 (+) True G114123
TU142941 other downstream 358324 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 706758 1219779 ~ 1220216 (+) True G114219

Expression Profile