RNA id: AMCG00018058


Basic Information

Item Value
RNA id AMCG00018058
length 2217
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00018058
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 667954 ~ 671836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGTGGAGGCGTGAGAGTCAGTGTCGCGGCCAAGTGACGTCAGAGACGCGACGTGCGCAGAAGCGTCGCCACAGGTCGGGGCGCTCACGCACATGTCCGCTGCTTGTGTCTGAATCTGTCCGTGCGCAGCCCGAATGGCCGAGCCCAAGAAGAGGAGCAAGAAGCAGTACAGCAGCTATGGCAAGAGGCACAAGGGCGCCCGGGAGCTGGAGGTGGGCATGCAGGGCATCCTGATCACCTGCAACATGAACGAGCGGAAGTGCACCTCTGAGGCCTACAGCCTGCTGAACGAGTACGCAGACCAGCTGTACGGACCGGAGAAGTTCtcggaggaagaggagggcgGCAGTCATGCGGAGGAGGACGACGACGACCTGGAGGCCGCTCTGCAGAAGGAGGTCCAGCAGCTCCGCAGCTCCACCGCCAAGCGCCAGCGCCGCTTCCAAGCCCTGGAGAGCGGCGCCAACAACGTCATCTTCATCCAGACGCAACATCTTGACCCTGACAAGCTGGTGCACCACATCCTGCAGGACCTCCATTCCACCAAGAAGAAGAAGTCGCGCGTCATGCTCAGGATGCTGCCCGTGAGCGGCACCTGCAGGGCCTTCCTGGAGGACATGGAGAAGTACCTGGCCGGCTTCCTGGAGCCCTGGTTCAAGAGCCCCAACCAGGGCACCTTCCAGATCGTCTTCAAGGCCCGGAACAGCTCCCACGCCAAGAGGGACGATGTCATCAAGGTCCTGGCAGCGCTGGTAGGGAAATTGAATCCGAAGAACAAGGTGGATCTGACCAACCCGGAGTACACCGTCATCATCGAGGTGATCAAGAGCGTGTGCTGCGTCAGCGTGGTGCGGGACTACATGCTCTTCAGGAAGTTCAACCTGCAGGAGGTGGTCAAAGACGAGCACGAGAGGGAGGCCAGGTCGACGGCAGACAACGGCCAGGAGACGTCCCAGAGAAGAGGAGGGGACGCAAGGGCCGCGGAGGATGGCGGGGTGAAGGGGCCGGAGGcggaggagggagggaaggaagcCGTGCCGCAGGAGGAGAGCGCGGCGGCCACGGGGACGGAGTGAGGGATGCCACGCCGAGGGAGGTTTTAAATGTGTGAGCGTGTGAAGCGTCCCCCGCAAGGCGAGGACAGGGCTGTGTCGATGAACCTGCAGATTTAggatgttttgtattgtatgtcaACTTTGACctgatttaaaatgctgtatagtagaattttatttttccccccctttcctGAAATGTCTTCAAAGTCTTTCTAGACGACTTGCATCATCATattcttcctccacttggttgTCGCCGTTATTAACCAGTTGGTTTTATTACCCAGAGAGCATTGCAGGTGTGTGGAAGTGTGCAGCATAACAAACCGCAcaccatcaaaataaaaatggtttggaataattatacttttttaattcaaCTACTTTTCAGCTGTAAATATGAAGTCACTCCAGTCTGTAAAAGACACTTCTTTGTGTCACTAGAGAGCCGGATGCATTTGTCTTGAAGGAACAGCAGATTGTGTCCAGATCTCTGCAGGTGTTTGTTAATAGTGATGagggtttaatttattgaatttgAATAGGGGAGAcactaaatatttttaaaccatcaGTTTAGTGTCTGATTGTCGAtgctctttattttgttttaagtaacaGGATTTTATTATAGTGATTATGTTGGCAACAAAGTCCTTTACCCGCTTACGGTGAAAATTCAGATCTTCACATTCTCCCCAGACTGTAGTCCTGACAGtggacacctctctgtgtgcagGACAGGCCAGGACTGGACAATTGACCCCCGGGACAGGACGGCTCCTTTCTCACGTGATGCTGTTGCTCACACTGCTGTGAAAATCTCTGTGGATCATGTAGTTTGATTTAGTAAGAGCAACAAAATTACAGAAAGCAATAAGGCGTCTCAGAAatgttggtctttttttttaaagctccaGGGTTTCAAAGCTGGTttatggattttgtttgttattatatgttttcaaatgaaatggagtttgtttttgttctgacaGTGtcgtaatgtttgtttttcacttggaTGGAAATATCTGCTTCACTAATGGCCATTGATTTACCTGTGGATGTAAATTCATTTTAGAGAAAAACACTTGAAAGAATGTCATTACCCCCCACACCTTCTGTACTGAGTAAACTATTTGGTTAAAACGGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06963 TAN1, THUMPD1; tRNA acetyltransferase TAN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 114450 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 195830 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 491056 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 595004 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 618719 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 861639 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1192721 1864557 ~ 1865570 (+) True G114299
AMCG00018059 mRNA upstream 5838 657682 ~ 662116 (+) True AMCG00018059
AMCG00018062 mRNA upstream 30867 622978 ~ 637087 (+) True AMCG00018062
AMCG00018061 mRNA upstream 52159 612489 ~ 615795 (+) True AMCG00018061
AMCG00018060 mRNA upstream 58037 604330 ~ 609917 (+) True AMCG00018060
AMCG00018052 mRNA upstream 89643 578048 ~ 578311 (+) True AMCG00018052
AMCG00018068 mRNA downstream 65304 737140 ~ 739283 (+) True AMCG00018068
AMCG00018070 mRNA downstream 74839 746675 ~ 759719 (+) True AMCG00018070
AMCG00018071 mRNA downstream 88587 760423 ~ 760701 (+) True AMCG00018071
AMCG00018069 mRNA downstream 91718 763554 ~ 777290 (+) True AMCG00018069
AMCG00018072 mRNA downstream 199485 871321 ~ 889033 (+) True AMCG00018072
TU142799 other upstream 88250 575260 ~ 579704 (+) True G114053
TU142895 other downstream 105547 777383 ~ 794790 (+) True G114123
TU142941 other downstream 199509 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 547943 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1276005 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1301090 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile