RNA id: AMCG00018059


Basic Information

Item Value
RNA id AMCG00018059
length 2010
RNA type mRNA
GC content 0.65
exon number 9
gene id AMCG00018059
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 657682 ~ 662116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTAAGAAACTGTTATCAGCCATCCCGCTCCGGTACAAGACCTGGAGAAACAGACGACATGGCAACAAAGAAACTGGCCAAGGAGCTGGGCTTGATCAGGAGACGCAGGCGAGCTCCGGGCGGGGGCAGCCGGGCCGCGGCAGTGTCCATTGAATTCCCAGCTGTGCTTCTGAACACGTGCAGCGGGGAGATCGATGCAGAGTTTCACCACTACGTTCAGCCCCAGGAGCACCCCATGCTGTCCGCCTTCTGCACCGAGCTGACGGGCATCACGCAGGGTCAGGTGGAGGCCGGAGTCCCTCTGAGGATCTGCCTGTCCCAGTTCAGTCAGTGGCTCCAGACGCTGCGGCAAGAGAGGAACGTGGTGTTTGCCAGAGAGCCGTCCAGACCAGGGGCAGCTGCGGAGAAGCCATGTGCTTTTGTCACCTGGTCAGACTGGGACCTGGGTGTCTGTCTCCAGTACGAGTGCAAACGCAAGCAGCTCCGCAAACCAGAAGCTCTGAGCAGCTGGATTGACCTCAGAGCCACGTACAAGCTGTTTTATAACCGAAGACCCAAAGGGCTGAACGGCGCTCTGCAGGACCTGGGGATCGAGTTCTCCGGCAGGGAACACTCAGGGCTGGACGACGCCAGGAACACGGCGCGCCTCGCCTGGAGGATGATGTCCGACGGCTGCGCGATGAGGGTCACCAAGTGCCTGGCCGGGGTGCCGCCCACGACGCACCCCCCCGCAGCGCTGCCCCTGGCAGAGAGCGAGAGCAGCGCAGAGGCCCCGCGGCAGCGAGAAGCAGGCAGGGAAGGAGGGAGCGGCAGGGAGAGCGCAGGAGGGAAGCGAAGTCGGACCATCCTGCAGTGGGTGGAATCAGAGGGCCGTCCGGGTCGGCGCCGGTCTGCGGGGGATAAAGAGGCGGCACAGGGACTGAGTGCCAACACTGAGAGCCTCGTCTGCCGCAGTCTGGTGTCTCCCAGGACCCTGCTGCACGGGCTGACCATGCCTGGGCTCCCTGGATGGCGGTCCATGACCAGAACCATGTCTGTGGGGTCAGCGGTGCATGTAAACAGCCCAGCGCCGCTCGGCACCAGCCTGGTGCTGGTCTCCACTACAGTTAACTGCCTCACCGAGACCTCGGAGGAGCACGGCGGTGTGGGCTGTGACTCCGAGACGGTGCCTGTGGACTGGGAGGACTGCCCGCTCTGGCCCGAGACGGATGAGAGCTGTTCGTATGACGCCGTGGCCCTGGAGGACACGGACACGGGCAGCCAGTCTGAGTCTCTGTGGAGCGGCACACACGACGCACAGCCGCCGGGTGACGCGGGTCCAGCACTGACTGAGTCGGACCGGCAGAATCCAGTCGTGTACAAAAGCTCCAACACTACAGTGTACTCTGTTGGCAATGCGTCGCTCTGCCCCGCCAGCCAGTCCTTTAAGACCCCCAGTGTGTGTGCGAGGGTCTTTCACAGCAGCACTCTGTCCAACACGTCCCTCTGCTCAAAACCCAGGATGGCGGCCTGCGGGGGCCGAGACGGGATGCTCTCTCGCCCGGGTCACTACGGGACCGGGGCCTGCGACTCCTTCAGAATCTACCAGGACAAGGACGGCTCTGGCTGCTCGGACAGTGTGGGCCGGACCCCCGTGCCCCCGGGGGTCCTCTCTTCCTCAGTCAACACCAGGgtgtcctcctcttcctcttcctccagcgCTGCCCTGAAGCTCACTCCCCCGCTGTGTGGCTGCGGCCGCCGGGCCCGGAGGATGACCGTTTCCAATGGGGGGCCCAACAATGGCCGGGCTTTCTACAGCTGCCCCGCGGGCAAATCTAGGCCGGGCATCAAGCAGAGCTGCGGCTTCTTCCAGTGGGAGACGGCTCTGGCCCGGCGCGTGTCCCTGACCTCGACCTCTCTGTGTGCCGGGCCGGGCGGCACTCTCGCCGTCTCGAGGGGGAAGGTCCGCAGCGCGGAGGTCTCTCAGCACCGAGGCCTGGGCCTCCGACCGGCACCGAGGACTTAG

Function

GO: NA

KEGG:

id description
K18417 ERI2; ERI1 exoribonuclease 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 104178 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 185558 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 500776 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 604724 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 628439 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 871359 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1202441 1864557 ~ 1865570 (+) True G114299
AMCG00018062 mRNA upstream 20595 622978 ~ 637087 (+) True AMCG00018062
AMCG00018061 mRNA upstream 41887 612489 ~ 615795 (+) True AMCG00018061
AMCG00018060 mRNA upstream 47765 604330 ~ 609917 (+) True AMCG00018060
AMCG00018052 mRNA upstream 79371 578048 ~ 578311 (+) True AMCG00018052
AMCG00018057 mRNA upstream 82297 575104 ~ 575385 (+) True AMCG00018057
AMCG00018058 mRNA downstream 5838 667954 ~ 671836 (+) True AMCG00018058
AMCG00018068 mRNA downstream 75024 737140 ~ 739283 (+) True AMCG00018068
AMCG00018070 mRNA downstream 84559 746675 ~ 759719 (+) True AMCG00018070
AMCG00018071 mRNA downstream 98307 760423 ~ 760701 (+) True AMCG00018071
AMCG00018069 mRNA downstream 101438 763554 ~ 777290 (+) True AMCG00018069
TU142799 other upstream 77978 575260 ~ 579704 (+) True G114053
TU142895 other downstream 115267 777383 ~ 794790 (+) True G114123
TU142941 other downstream 209229 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 557663 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1285725 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1310810 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile