RNA id: AMCG00018063


Basic Information

Item Value
RNA id AMCG00018063
length 3392
RNA type mRNA
GC content 0.64
exon number 12
gene id AMCG00018063
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 579900 ~ 590822 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCTGCCCGTTCAACGCGCTCCTCTCCGGGCTCTGTTTGCTTGTGACGCTGCCGCCGTCCCGGCCCGCCGAGTGAAGCGGAAAGAGCCTTTAAACCGCAAGAGACGCGCTTCCGGCCCGCTTCCCCCGGCTCGGAGCTGGATGAACTGCCGCCGCGCTGGCTGTGTCGGGCGGGAACCGCGTCCGGCTGCGCTGCGTTGAGCGGGTGGGAGAAACTTCGAGACGGTGCCTGGCGGGCGGCCGGGCGGAAGCGCAGGGGTACGTGGCGGAGCGGGGTTGCTGATCCGCGCCGAGTGAAGTCGCCGGCCGCACCGAGGCCCATCCCGCCCCCTGGGGCCGGTACCTGAGAGCTGTGCACACCGAGTCTATAAATGGGAGGCACGGGGTAGACTCGGCATGGTGCGGCGGCTGCGAGTCTCTCTCCGGCTGGTGGTGAAACAGATGGCCCGGAGACCCGACCTGCTGTGCGGAGCCATCGTGCTGGGCTGCAGCCTCCTGCTCGCACTGCGGTTCACCTGCAGTCGAGCGAAGAATGTGGTGGCCCCTGCCCGGCCCCCAGTGCGCTTCTTCTCAGCAAACTCCCCGGTGGTAGACCTGTTCCTGGGGCAGCTGGACCAGGTGGAGCGCCTGCGCGGCGCGGCAGACGTCTCTCTGGTCTTCTACTACGCCCCGTGGTGTGGCCGGTCCATCGCTGTGAGGCCGGAGATCGAGCAGGTGGCCGGGAGGCTGTCCGGGGAGGTGCAGTTTGTGGCGATCAACTGCTGGTGGAACCAGGGAAAGTGCAGGAAGCAGAACAACCTCTATCAGTACCCGGTCATACACCTGTACTACAGGAGGTTCGGCCCCATCGAGTACAAGGGCCCCCTGACCGCCGCCTACGTGGAGCACTTCGTCCGCAGAGTCATCGCCCCGCTGGTGTACCTGCCCTCTCAGGCCCGGCTGCAGGAGTTCCTGTCCCACTACGAGccgGCAGTCGTGGGGTTCTTTGAGTTCAACGCCTCCCCGCAGCCGCCCGGATACATGGAGTTCCTCAGCTCGGCTCTGCAGGCGCTGAAGAGGGACATCCAGGGGGCGCTGCGATTCGGGGTGGTCACCAGTAAGTGGGTGGCCGCATCCATTCCCCTGCGGACGCACGGAGCCGTGTACCTGCACCGCCGGCTCAACGCCTCTCTGGTGTTCCCCCGCGAGCGGCTGAACTTCACGGCGGACGGCGTGTGCCGCTGGGCGCTGGAGCACCGCGAGGTCCTGCTGCGCTGGCTGCGGCCGCACGGGGGCAAGAGCCGGCTGCTGGACAGGGAGCTGGGGAAGGGTGCCGCGCTGCTAGTCTTCGTGCCCTTCGACCCCCTGGCCGAGCATCAGCCGCTGGTAGCGGAGATCGCCATCCAGTACCACAGTTGCCCCGAGGGCCCGGACTGGCAGTCTCCGCAGGGCAGGAGGAGCCCCCCTGCCGAGGACCCCGGCCCCCTGTGCTGCAACACGGTGGTGCTGCCCCGCTGGCACTCCATCTCGCGCAGCCACAACGTGTGTGAGCTGTGCCTGAACCGCTCGGCCGCCCCGCCCTGCAGCTTCCTGGAGATGGAGGCGGCGCTGGACTCCTTCTACCTGCGGGAGCGGCTCGCCGTGCGGCTGCTGTCCCGGAACACGGCCTGCAGCAACATCCTGCGCTCCTACAGCCCCTCCGGCTACTACAGCGCCTGCTGCAAGATCCTGAGCCACGGCCGGGCCCAGACCAGTGGCCCCCCGTCTCGCTCGTACCCTCCAACGCCGTTCCAACCCCCCCCTCGGGACGCTCTGCCTCACTTCGAGGACGGTGGACCCCCTGTGGCTGACCCACTGCAGGCCACCAACGTCACCGGGCTCAGGTGCCGTACGAACAAGACGCTGGGCTTCTACCTGCTGGACTCCCACCTGCACTGGAGCCTCGCCGAGCGGCTGGGGGCGCCCCGCAATGGCACCGCGGCGGCGTTCGCCACCATCGTGGATCTGCGGGACGAGGTCCACTACATCCTGGACCAGAGCCCGCTGATAAAAGCCACACTAGAAGACTTCATAAGAAACTACAGTGTCCCCTACAGCCCGCTGACCCGGCACCTGAGGGGCAGTGCAGTACCGCCCCCCGCCGGCTCGGCCCTCACCGAGGTCACCACGCTCAGCTTCCAGCGCCTCGTCATGGACCAGGACAAGGACGTCCTGCTGCTCTATTACACGCAGTGGTGTGGCTTCTGCTCCGCGCTCAACCACGTGCTCCTCCAGCTGGCCCGGCTCCTGCAGGGACACCACGGCTTCTCCCTCTGCAGGATCAACGCTGCCAGGAATGACCTTCCATGGGAGTTCATGGTGGACCGTGTTCCTGCCCTGCTGCTCTTCCCCAGGAACAGGAAAGCGTGGAGCGTGAAGTTCCCGGAAGACGCCCCCGTCACCCTGCCCAGCCTGCTGCGCTTCCTGCTGCACAACACGGGCCCGGCCGAGGGGGAGAGGGTGACCCGCGCGGCGCTACTGCAGGAGGAGATGGGCCGTCTGCGGGCGGAGCTCCAGATGCTAGAGCACACCCGGGAGCAGCTCTCCCAGCACGCCCTACACAACGAGCCGCAATGGCAGGGCCAGCGCCTGGAGCAGCTCTCCCAGCTCAAGCAGGAGCAGCTCGAGGCCCTTGCCCAGGCTTCCCAGGGGCCCCAGAACACCCTGCAGAGGGATAGGGGCCCGGCCCAGGCCGTGGAGACCGAACCCCCATGGGATGGAGAGTCACCGACATGCAGGGAACAGGCCTCACCCCCGGAGCACGCATCCCCAGAGGACTTGCACAGCAGTCCGGAGCGGGACGGGGGTGCGGGGTCGTGACACAGACTGAGTTACAGAGTGTTGAAGGTGGTTGTATATTAGGGAAGtatttatgattgttttgtgttcCCCCCCTGTGATCGTCGCCCTTAATGAGTGTTTTGTCAAAAATACAAGAATCTATTTTTACATGAATCCTCAGCCATCACTTCAGTATCTTATGGACTTGACTATTCAGgtatgaagaaaaggaaaaatgctGCATTTGTTTACACTTTGAATATTGCACAGATTTGTActaattaaacagtttaatttaactGCGGCTGTGTGTCTGATGGAGGGGGGTGTTGTGCGAGATGCAGGACTGCCTTCACACCGACTCATTCTCAGACCCAGCACTGCTCCAGCGCAGGGAGACCGAGAGGGGCCTTGCCCTTGGACTGAAACCAGCCATCGGTGTCTTACTTTCCACCTGACCCTCCTCGTCCTTGTGAAGTTGAGCGTTTACCATGTCAGTCTAAGGATGGAGAGCGGCGGGGGGGCGACCGCAGTGGCTGCTGGGTTTAGTTCCAGCATAATTAAACTTCTTTCCAGACTCAGGAATGTGCTG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142784 lncRNA downstream 80382 498327 ~ 499518 (-) True G114044
TU142769 lncRNA downstream 107776 468917 ~ 472124 (-) True G114030
TU142932 lncRNA upstream 206171 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 288489 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 311498 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 322409 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 572068 1162890 ~ 1166493 (-) True G114213
AMCG00018055 mRNA downstream 14318 558522 ~ 565582 (-) True AMCG00018055
AMCG00018056 mRNA downstream 28660 546786 ~ 551240 (-) True AMCG00018056
AMCG00018054 mRNA downstream 41906 536678 ~ 537994 (-) True AMCG00018054
AMCG00018047 mRNA downstream 90854 484037 ~ 489046 (-) True AMCG00018047
AMCG00018048 mRNA downstream 98580 473096 ~ 481320 (-) True AMCG00018048
AMCG00018065 mRNA upstream 971 591793 ~ 609889 (-) True AMCG00018065
AMCG00018067 mRNA upstream 26389 617211 ~ 622245 (-) True AMCG00018067
AMCG00018064 mRNA upstream 60465 651287 ~ 658508 (-) True AMCG00018064
AMCG00018066 mRNA upstream 71427 662249 ~ 667911 (-) True AMCG00018066
AMCG00018074 mRNA upstream 186565 777387 ~ 800372 (-) True AMCG00018074
TU142760 other downstream 137476 441085 ~ 442424 (-) True G114021
TU142989 other upstream 332685 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 332685 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1394327 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1416084 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1690878 2281700 ~ 2288862 (-) True G114430

Expression Profile