RNA id: AMCG00018064


Basic Information

Item Value
RNA id AMCG00018064
length 2828
RNA type mRNA
GC content 0.63
exon number 21
gene id AMCG00018064
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 651287 ~ 658508 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGAGTTCACTGCAGTGCAGCAGGGCGGCACTGTACCCGTGTTTCTGGAGGAAAGTCTCtgcagacagaaacacacaaacactaagaCAACGAGCGCGATTCAGCCAACGGGTTACACAGACACAACACGCGGGTTTGCGACAGCAGCGCCAGTGGACACACACGTGGTGGGACAGGGACCAGCGCCAGGTCCCACAACAGCTGCGCCCTCGGCCCGGACCAGAGAAGACCCAATGGCCGTGTCTGTGAGAGCCGCGCTTAAACGGTGGAGAGAAGACACAACAGCCCAGGATGACACCCCGAGGAAGTCCAGAAAGCTGAACCACGAACAGAGAGCAGCATGTGTCCATGAACCTCAGCTAACGAAGGGTCTTCCGAGACTGTCCGTGGACGTCAGCCCCTCCCGGAGCCCCGTCACCCACGCACAGCTGGGGCAGCTGCTGTGGTTCGCCTCTCTGGGGAAGAGCTGTGGAGCAAAGCAGCCCAGCTGGTGTCGCTTCCACCATCAGAAGCAGCTGTCTGGCGTTCATGTGTCGGTGCTGCGCGGCGTCGGTCAGCACCACTTCTACAGTCACTACCTGCGCTTCAAAACCCTGCGCAGGACGTTCTCCACCCGCTTCAgtctgccccccccacctccagaCTTCCTGTCCGCCGTATTGAGCGCAGACACGGATCGTGCTGCCCAAAGCTCCTGTCGCTCGGCATGGGAGAATCCTGCAGGGAGGACGGCGGACGCGGCTGCAGAAGCCGTGCCGGTGGACTCTGAGCCGTCCTCTGTGGCCGACCTGGTCAACAGCCCCATTGTCCGCGCCTACGGCACCGAGAAGCGCGGTCTCAGCGGCTACGTGCTCAGCGCCGCGGACATGAGCAAACATGGGTTCCCACTGAAAGacagcagccccCTGTTTGGCCTGGACTGTGAGATGTGTCAGACCAAGTTTGGCAAGGAGTTGACCAGAGTGTCGCTGGTGGACGCGGAGGGGCGCTGCCTGATGGACGAGCTGGTCAAGCCGTACTCTAGGATATACAGCTACTGCACCAGGTTTTCTGGGATCACCAAAGCCATGCTGCAGCCGGTCACCACCAGGCTACCGGACGTCCAGGCCCAGCTGAGGAACCTGCTGCCCCCAGACGCCGTGCTGGTCGGCCATTCACTCGAACACGACCTGCAGGCCCTGCAGatgatcCATCAGCACGTCATCGACACCTCGCTGCTCTTCCCCAGGGAGTTCGGACAGAAGATCAAGCTGAAGACCCTGGCGGACGCTGTTCTGCACCGGACGATCCAGAGCGAGGAGAGGATCGGCCACCACCCCACCGAGGACGCCGTGGCTGCCCTGGAGCTGGCGCAGTACTTCATCAACCATGGCCCCAAACAGGTGGCGGAGGTGATGCTGGAGTACTGGCGGAGGCAGATTTCCTCCCCCCCGCTGAACAACCCCAGCGAGCTGACCAACGGCCCCGACAGCGGCCTGCCCACCCAGCCCAGTCTGCCGGCGGCTCTGCGGGCGGCCGGTCTCGCCGCGGTGCACATTGTGGGGGTGGGCGGTGGCGGCGCTGAGCCCTGGGCCAAGGAGGGGCAGCGGACGACCTGCGGCTCGGACCGGGAGGTGCTGTCCACCTCCTGCAGACGGGTGCCGTCCAGCTTCTTCAGCCTGGTCCAGTTCTCCTCGCTGGCCGAGTCCCCGGAGCCGCTGCACGGACAGATGCGGGCCCGCCTGACCGCCATGTGCACGGTGTTCGCTGGACCCTTCCTCCGCGGCGTGGCCTTGAAGTCTGTGAGGAAGTGGCTGCGGACCTGTGGCCCCATTCGAAGCATGAGGCTCCTGAGAGGGACGGACAGACCCCACGTGGAGGTGCAGTACAGCACCCTGGAGGGGGCGCGGCTCGCCCTGTCCTCGCTGGATGGCCAGGAGAGGGACGGTCTCTGCGTCAGGGTGCAGAGGCCGGTCACAGAGCTGACCCTGGAGGCCGAGGCtctgctgcaggagctggaggcAGAGCCGGCCCAGCAGAGGGCGCTGTACGTATCGGGCTTCTCCCGGCACCACAGTGAGCAGGACCTGCGCCTCGCCTTCCTCCCGTTCGGCCCCGTGGAGGCGGTGGAGCTTCCCAGGATGTCCTCGGGAAAGAGCCGCCGATACGCCTTCATCAGGTTCCAGTTGGACCAGAGCGTCTCCTCTGCCCTGCTCTCCCCACTGCAACTCCTGGGGCCAGTGGTCAGGAAGTGCAGGGCCCTGACGCCCGCCCACGTCCGCAGCTGGAGCCCGCGCTCGCCCCCCGCCCCGGACGGCTCCTGTCAGACGGCAGACTACAGCTGGACAGCGCCGCCCCCGGACAGAGACGTTCGAGATGCGATTAGGAAGCTGGACCGCCGGGTGGGGAAGCTGTACGAGACTCTGCCCAGTGGGACGTTGTGTCTGGTCCTGCTTCCTGGACAGACCAGTGCCAGTGGGGATTCCCCAGGTCTGTGTATGGTCGGGATCAAAGACCGACCTGCGAAGAATCCCGAGCCTCTTGTGTGAGTGGAAACTCCCGACCCGACCCCGGGAATGCGCTGCAGAGACCGAGGCTCCCTCTGCGATGACGGCGTCGCTCTTTTACCCCGATCTGTGTCAGCTCTCGCTTTTTTCCAAGAGagcttgttttattaaagagagagagggggatatAACCAATTGTTTCTCTGTCTCaaatacacaatgaaatgttttaactgCCCTTCTGTAACACCTGTTATTAATACACACGTCGTGTACGCTGCTCTGTCAGGtccaaataaacatttcatcTGAACCCAGCTGTGCTGCGGGGAGGTGTG

Function

GO: NA

KEGG:

id description
K14570 REX1, REXO1, RNH70; RNA exonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142784 lncRNA downstream 151769 498327 ~ 499518 (-) True G114044
TU142769 lncRNA downstream 179163 468917 ~ 472124 (-) True G114030
TU142932 lncRNA upstream 138485 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 220803 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 243812 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 254723 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 504382 1162890 ~ 1166493 (-) True G114213
AMCG00018067 mRNA downstream 29042 617211 ~ 622245 (-) True AMCG00018067
AMCG00018065 mRNA downstream 41398 591793 ~ 609889 (-) True AMCG00018065
AMCG00018063 mRNA downstream 60465 579900 ~ 590822 (-) True AMCG00018063
AMCG00018055 mRNA downstream 85705 558522 ~ 565582 (-) True AMCG00018055
AMCG00018056 mRNA downstream 100047 546786 ~ 551240 (-) True AMCG00018056
AMCG00018066 mRNA upstream 3741 662249 ~ 667911 (-) True AMCG00018066
AMCG00018074 mRNA upstream 118879 777387 ~ 800372 (-) True AMCG00018074
AMCG00018073 mRNA upstream 144212 802720 ~ 840922 (-) True AMCG00018073
AMCG00018078 mRNA upstream 231589 890097 ~ 901668 (-) True AMCG00018078
AMCG00018080 mRNA upstream 257332 915840 ~ 919384 (-) True AMCG00018080
TU142760 other downstream 208863 441085 ~ 442424 (-) True G114021
TU142989 other upstream 264999 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 264999 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1326641 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1348398 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1623192 2281700 ~ 2288862 (-) True G114430

Expression Profile