RNA id: AMCG00018065


Basic Information

Item Value
RNA id AMCG00018065
length 5458
RNA type mRNA
GC content 0.58
exon number 29
gene id AMCG00018065
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 591793 ~ 609889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttaaacattatataaaacttGTGTAAGGCCACCTGAAATATAATCTTTACAAATGTCAGCCAATGGCACTGAATGCAATAACAAATGAGTTTCTGTGGTTTCTTGCGGTGTTGTTGTGGTGCCATCCTGCGGTGCTGCCGGTCACAGCCAGGCGGGGTTGCCAGGCGGGCACAGCGGCTCCAGATGCAGCAGCACCGCCCCACTGGGGTTCACGCGCAGGTAGATGACCCCACTGAGCGTGAAGACGCCGATGGGGCGGGACTCGAAGACGTCAAACACCTTGTATCCCAGGTGACACTCCACGATGTACAGCTTGGCCAGGTTGATGGCGATGGGCAGAGGCATGGGGTCCTGGGCACCGTGCACCACCGCCACCGCGTACCTCCCGGCGGAGAGAGGCCTCTTCCACACCTCGAAGTGATCGTCCTTATAGACCCGGGCACCCTGTACGCCCAGGGGGTCCTGGTTAATCGCGATGGCCAGCTGGTTCTGCAGGATCTCCTTGGCCCGGTCCGAGATGCTCCTCAGGTCGTTGGACATGAAGAGGGGCGCTGCCATTACGACCCACACGGCCATCTGGGTCTTGGACTGCTCGTAGCTCAGCCCAAAGTCACCGACCACGAGCATGTCGGGGTCGTTCCAGCGGCCCGGCCCGGCGGCTGGCTGCAGGACGTCCTGGTGATTCCCGAACCACTCGATAATGCTGTACACGGAGCCCCACGAGTCCTGGATATCGCCGTAGTTCCTCCACAGGTTGCAGATCTGTCCCAGCAGGGCGTAGTCCACCTTTGGGGGGAGTCCTCCCTCGTAGGCCGGCCAGCTGCAGGAGAACATGATGGGCCGGCCGGTGGCATTTAAGGCCGCGCTCATCTTGGGCTATACCTTGTGCTTTAACAGAGGAGTTCGAGTAGCAGCCGTCCAGCTTCAGCATGTCCACCCCCCACTCTGCGAAGGTCTGTGCGTCCAGAGCGACTGTGTCCAGAGTGGTGCCCGGATACCCCCCGCAGGTCAGGGTCCCCATGTCTCCGTAGATCCCCAGCTTCAGGCCCTTCGCATGGACGTAATCCGCCAGGGCCTTGATCCCGCTGGGGAAGTGCTGGGGGTCGGCCGCCAGCCGGCCCTGGGCGTCCCTCTTCTTGGCGGACCAGCAGTCGTCGATGTTGACGTACTGGTAGCCCAGCTCCCTCCAGCCGTCCGCTGCCAGCCGGTCGGCCATGGTCTTGAACAGCCGCTCGCTGATGCAGTTGTCCGGGTCGGTGTCGCAGTCGATGTCGCACCGGTACCGCTCCCAGGCCAGCCAGCCCATGGGCGGTGTGCGGGCCAGCCCGTTGtccagacagagacaggggCCAAGTAGGGCCAGTAGGGCCAGCAGACAAGCGCTCCTCATGATGAACTGCCCTCTGCTAATTGCTAATATTAGATATCGACAACAGACAATTGTTCGGCTCAGGGCAGTGCGCAGACGCACCGAAGCAGCCCCGGTCCCAGCCCGGTCCCAGCCCGGTCCCAGCCCGGTCCCACCCCCTGCGCTCGGGGAGGGAGCAACCAGGAAGCGCTAGGACGTGCAGCCCTGCGGGGACACTGTGGACTGTGGACACTGGACAGCCAACAGGACAAACTAAGCGGCAACAACAACGGAAACTCTCAGCAATGGCCAGTGAGTCTGACCTCGCACAAGTGTCCGCGCTCATCACTGCGGCCCTTGATCAGCTGATCGGGGCCCCGGGGAGCCGCTGCGTTCTGGAACGCAGTCTAATCGTCCCGAGACGAAACCGCGGCTTCGAGCGGCTGCGCATCTCGTCCGACTGCCACCCCTGCGCTGCAAAACGCAGTGTTGACAACATCGAGGACCTAGATTCTCCTGGCAAGATGTCCAGCGATTCTGTAGACCGGAGTGCCCGGTGGCAGGACATCCTGAGAGGCCTGCAGTTCATAcaGTCTACATTGCCCTACCCTGGATCTCAGGAGGAGTATGAGGTGTTCATCCAAGCCCTGGTGAAGAACCTGTTCGGCGAGGGCAACGACGTGTACAAGGAGGGCGACTGGGCCCGGGCGCTGGAGATGTACACCGAGGCGCTGAGCATCGCCGAGTACGCCGACTCGGAGGAGATCAGCGTGTCCAGCGAGACCATCGAGAAGCTGTACGCCAACCGCGCCGCCGCCTACTTGAACATGGGCCTGCACGACCAGGTGCTCCGGGACTGTGAGAAAGCGCTGCAGTGCAATGAGAATAACTACCGGGCTCTGTACCGCAAGTCCAGGTCCCTGAAGGAGCTGGGGAGACACCGGGAGGCCTACGACGCCGTGGCCAAGTGCTCCTTCGCGGTGCCGCAGGACGAGAGCGTCATAAAGCTGACCCAGGAGCTGGCAAAGATGCTGGGATTAAAAATTCGGAAAGCCTACGTCCGAGCCAAGCCTGCTTTGAACCCGTTGCCTGGGGCCACAACTCCAGGGGCCTCGAATGAGAAGTTTTCTAAGGGCCCTGTTTCAGTGGAGGACATTGAATCAGAGCTGTCCGTGGGCGCTCAGGAGAGGGGCTCCTCCTCGGTCCCGGTGTCCGCCGTGGCGCCCTGCTCCTCGGTGAGCGAGACGGCGGAGAGCAAGGCCGCCCCCGTGCTGGCGGTGTCCTCGGTGTCGCCCATTGAGTGTCGGGACACGGGCGGCCTGGCCCCCGCCGCGCTGGTGAACGGGACCAGCGAGTCGTACCCGGTGCCCGAGTCCCAGCTGGACTATGACGGTGACATCATCGGCGATGATCTGGACGAGCTGCTGGACAGAGCCGCCCCTCCGGTGGAGCCCCCGATGGCCATTCCCACCATGAAGGGGCCCATTCCTTTGACGACCGGCGTGGCCGCCAGCCTCTCCCGGCCCAGCCCCCTGCTCGTGCCGGCCATGCCTGTGTCCGGTCAGTTCGTGCCCTCTGTGACCCTGTCCTCGGTGTATCACATCGCCATGAACACGGGGATGTCCACGCTGGAGAAGTTCCCCAACCGAATGGACTCGCTGGACACCCTGTCGATCTCCGAGACCCAGACAGGTAAGATGACCCGGTCGGTCTCCGTGTCTCTGAAGCCTCCGGAGCCGTGTGTCGGGCCGGTGCTGTTTTGTGGGAGTGTTCCGGCGGCGGACGAGAGCTTGGCCGATTCAGGGGGTCTTGTGGAGCTGCAACGAATGTGTGCCGCGTGTAGACCATCTCCTGAGCCTGGCAAAGACAATCTGTTGGCTTCTCAGAGTGGAATGGGTGTCATAGATCATGATGGGGGGTTTCCTAGTGGACCGGACCCGGGTAAAAACCCTCTGGCCGACACCCATGAGTTCAGACAGGCCTGTAACCTGTGCTACGTGAAATCAGATGTTGCCGTGGGAGAAGAGTGCCGCTACCCAGGCCACTGCACGTTCGCCTACTGCCAGGAGGAGATCGACGTCTGGACGCTGGAGCGCAAAGGCGCTATAAGCCGGGAGATGCTGTTCGACCCGCTGTGGGGAAACGGGAAGATGAACCTGACCGTCCCCAAACTGCTGCAGGAGCACGACGGCATATTCATGTTCCTCTGCGAGGTGTGTTTTGACCATAAACCAAGAATTATCAGCAAAAGAAATAAGGACAACCCAGCGCTGTGCTCCCACCCCGTTACGAAGCACGACTTCGAGAAGGACAAGTGCCTGGTGCACATCCTGAGGGGCACCTCTGTCAAGTACACCAAGGTGCGCCCGGTGCACCCGCAGTGCCAGCTGGACCTGTGCCGCCACGAGGTGCGCTACGGCTGCGTGCGCGAGGACGAGTGCTTCTTTGCCCACAGCCTGATCGAGCTCAAGGTGTGGATGATGCAGAACGAAACCGGTATTTCCCATGAGGCCATAACTCAAGAGTCCAAGAAGTACTGGTCCAAGTTTGAAACCAACGTGCCGGGAGTCCAGCAGACCGCCAGCGTCGCCCGGAGGTTTGGACCCCCAAACCTGAAGATGCAGTTTGTGTGCGGACAGTGCTGGAGGAACGGGCAGGTCAGCGAGCCGGACAAGAACCGGAAGTACTGCACCGCCAAGGCCATGCATCCGTGGTCGAAGGAGAAGCGCGTTGTCCTGGTGTCGTCCAGCGAGCGCAAGAAGTGGATCACCATCCGCCCCCTCCCCACCAAGAAGCCCATCCCCTCTCAGTTTGATCTTTGCATCCATATTTCTTCGGGCAAGAAGTGCCAGTACATCGGGATCTGCTCCTTCGCTCACAGCCCAGAGGAGAGAGACATGTGGACGTTCATGAAGGACAACAACATCCATGACATGGAGCAGCTGTATGAGCGCTGGCTGAAGGCCCAGAAGCCGGACTGGAGCGAGGAGGCGGCCAGCAGCACCACCAGGGAGAACGGCAAGCAGATCCACATGCCCACCGACTACGCCGAGGAGGTGGCAGGGAACCACTGCTGGCTCTGTGGGAAGAACTGTAACAGCGACAAGCAGTGGCAGCAGCACATCACCTCCGAGAAGCACAAGGACAAGGTGTTCAACTCGGAGGATGACCAGAACTGCTGGCAGTACCGCTTCCCCACGGGCTGCTTCCGCGTGTGTGAGAGGTTTGTGAAGGGCACCTGCACTGAGGGGGAGAGCTGTAAACTGGCCCACGGGGAAGTGGAGCTGAAGGAGTGGCGGGACCGCAGAGAGTTCCTACTGATGAAGCTGGCCAAGGCCAAGAAGGACAGTCTGATCGCACCAAATGATAACGACTTtggaaaatatagttttttgcTTAAAGACATTAACTAATTGTTCACGATGGGCTGATGCTGAGTGTGTAACACGGAGTGAAAAGGCAAACTAACCGCGGGAGCAGGGGGGGCGGCGGACGCGCAGGATTGTGAGACAAGGACCGCAGGGGAGGTTGTATTGAgcgggttgttttgttttgctttgtctttttctgcATCTTTACTGATCGTAATCGGAGCACAATCCTGGCGTCCCACTGGTGCCGACTCTGACTGAAGCTGACGTGCATTGAGTGATCAGGGCTTTGTTGACGTTGTCTCTGATTAAAACCGACAGACGACGCCTTTACGTAGAATAACGGCTCTCTGGGGCATCAATGGCTGACTCCACAGAAAAGGAAGTCAGGAAGGGGTTACATAAAGCAAACTGAAGAAGATGGGGCCTCAGTGAGGGGCTCCATAACGGCCAACTTAATATGAGCTTTTacttaagtttttttttttttttttcatttaaatggttTCTAAAGGAAATCCAACCTTGATCGGTTCTCGTGTTGATTTGATTCGTGATGTTTGCTCCTGTACGGACTGGAGAAAAATGGAATTTGAAAAATCTGTTTGAGTTTATTTAGCCTGCGATATTTAAGTGTCTGattatttcttccataataaGTATGTAATGTGTGTTGGTACCAGGAGAATGGACCAACAATgccaaaataaaatctacataTATATGAACGCATGAGA

Function

GO: NA

KEGG:

id description
K24945 ZC3H7; zinc finger CCCH domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142784 lncRNA downstream 92275 498327 ~ 499518 (-) True G114044
TU142769 lncRNA downstream 119669 468917 ~ 472124 (-) True G114030
TU142932 lncRNA upstream 187104 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 269422 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 292431 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 303342 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 553001 1162890 ~ 1166493 (-) True G114213
AMCG00018063 mRNA downstream 971 579900 ~ 590822 (-) True AMCG00018063
AMCG00018055 mRNA downstream 26211 558522 ~ 565582 (-) True AMCG00018055
AMCG00018056 mRNA downstream 40553 546786 ~ 551240 (-) True AMCG00018056
AMCG00018054 mRNA downstream 53799 536678 ~ 537994 (-) True AMCG00018054
AMCG00018047 mRNA downstream 102747 484037 ~ 489046 (-) True AMCG00018047
AMCG00018067 mRNA upstream 7322 617211 ~ 622245 (-) True AMCG00018067
AMCG00018064 mRNA upstream 41398 651287 ~ 658508 (-) True AMCG00018064
AMCG00018066 mRNA upstream 52360 662249 ~ 667911 (-) True AMCG00018066
AMCG00018074 mRNA upstream 167498 777387 ~ 800372 (-) True AMCG00018074
AMCG00018073 mRNA upstream 192831 802720 ~ 840922 (-) True AMCG00018073
TU142760 other downstream 149369 441085 ~ 442424 (-) True G114021
TU142989 other upstream 313618 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 313618 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1375260 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1397017 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1671811 2281700 ~ 2288862 (-) True G114430

Expression Profile