RNA id: AMCG00018069


Basic Information

Item Value
RNA id AMCG00018069
length 6915
RNA type mRNA
GC content 0.63
exon number 37
gene id AMCG00018069
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 763554 ~ 777290 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATCACTCAAGATGGACGCGATGCCTTCCTCGCACTCGGTTGGATATGAATTGCGTTGGTTGTTACGTCACGGTTAAAGCGTGCACTACGTACTACGCAAGGTCGAAGGTAAATGTGTCGGACGTCACGCACGTATCGCACGCATGTAAACAGTGCGGGTCTGGAGAAGCGGGACAGCGACGCTCCGGTGTGGCCGTGCGAGAGGCCCGTGTGTGTGAGGGAATTGACGCGCTTGTTTAGTTGCGTTGATGTGAACGGCCGAGTGGCTCCAGTCGACCCGCGATGGACGCGCTGCAGATGCTGGAGGACGAGGTGGCTCTGGAGGGGTTAGACGGCATCACCATCCCGGCTCTGTGGCTCCGGCTGGAGACCCGGGTCCCCAAGTTCCCGCTGAGGCTGGACGCGGCGTCGCGGCAGTTCCTGTGGCAGTCCCTGGTCAGCAGCCCCGACATCGAGCTGTTCGTGCTGCCGCAGCCGAGGCCGCCTCTGGTGCTGCTGGACCGGTTCGAGGAGATCGACCCCGAGACGGGCATCCAGGAGATCCGGGAGACAGTGTCCACAGTGGAGGACATCTACCCGGTGCACATAGTGCTGGACAACAAAGTCGGCATCAAGGGCTCTTGCCAGTTCTTTAAGGAAAGGGTGAATGTGACCAGTCAGGTCAGGAGCCGGGATCTGCAGCCCCTGTGCTCCCTGGCGGAGGCTTTGGAGAGgtGGGAGCAGAAGCTCGTTCTCGTCGCCTCTCAGACGGTCCGGTACCGTGCTCTGCTCAGCTGGGAGGGGGACCCGGACCTGAAGCTGCCGGACTATTCGTACTGCATCCTGGAGCGTCTGGGCCGGGCCCGCTGGCAGGGGGAGCTGCAGAGGGACCTGCACTGCAAGACATTCAAGACCGACGCAGGGAAGCTGCACTACCTGAGGAAGGTGCTGGACAGGAACGGCCTGGTCACCCTGCAGCCCCACGTGATCCGGCTGCCCAGCGGCAGTCAGCAGCACTCTGTCCTCCTGCTGCTGCGGCGCTTCCACGTGGACCGGAGGAGCAAGTACGATATCCTGATGGAGCGAGTGTCCAACATCCTGGCTGGGAAACCGGAGCGCATGGCCACCATGCTGAAGCTGAGGCAGCAAGTGGGTCTCAGTGAGCGGACCTTCAAACGCATGTATCAGTACATGATCGCGGCCGGCCTGGCGCAGGTGGTGTCGGTGCCGCTGCAGGAGCTCAACCCCGAGGGCGGGCCGCACAAGACCAAGAAAGGGACAGACATCATGGTGCGGTGCCTCAAGCTGCTGAAGGAGTACAAGAAGAAAGTGGATGAGGAGGACGATGACAACGATGACGAGGACCGGGCGAGGAAGAGTGGCCAGCTGGACACTCGGGTCGTGGAGAGGGACGTCCTCGCGCAGGCCTATGAGATCATCGAGAGCACGGCCACCAAAGGGATCTCGCAGTCGGAGATCCGGAGACTCATGAACGTGGGGAAGCTGGAGGGACGCATGATCTGCCGTCTTCTGGAACGATACCACATGGTCAAGGGCTTCATGGAGGACGAGGGCCGGCAGCGCACCACCAAGTACATCAGCAAGATCTTCGTGGAGCAGAGCAACCTTAACCAGCAATTCGAGAAGGAGAAGGCCCGCAGCGAGCAGCTCGGCACGGGGGGCGGCACCGAGGTGCGGGTGGTGGAGATGCTGCAAGAGGTGGGGGAGGAGGACAAGGCCCTGTCTGAGGAGCATGTCTCCCCGGTGCTctcggaggaggaggaagagcaggaggagaaAGGAGGGCGTCGTGCATCTGCCAGGAAGAAGACCTCAAAGAAGAAGGTGCTGAAGGTGGACACACGGACCCTCCTGAGGACGTCCAAGCTGAGTTCAGCAGTTCAGCACTCGACACCAAACAAGAAAGCCAGCACTCCGGCTCTGCGGCTCGTCGCCCCCGAGGCGTCGGATGTCTCGCTGGACAAGGAGGACCCCTGCAGGCCACCGGAGGAGTCCGACCGCAGCCCCGACATGTCAGACCGGACGGCCACCCCAAGCAGCAACGCCCAGTCGGTGGAGGAGGAGGCCAGCGTCACAGTGGTCGAGGAGGTCCAGGTGCCGCCCAGCAAGGACACGGGTGCCACGCCCAAGAAGACGAGGTCCAGGTCTGTGTCTCGCCAGGACCGGCCCCATGAGACATACCGGCTACTCAAGCGCAGGAACCTGATCATCGAGGCGGTGCGCAGCCTCAAGCTGATCGAGAGCCTCTACATGTTGCAGAAGATGATTCTGGACGAGGAGAAGCAGGACGGCGTCGCCACCCGGTGCTGCAAGAAGTCCATCCTGAGGCTCGTGCGCCGGCTGTCCCAGGAGGGCTTCCTCAAGCTGTTCTGCACCACCGTCATCCAGGACGGGGTCAGCAAGAAGGTTGAGTTTGTGgtccatccctccatcctccCCGACGACCCGCTGGTGAAAAGCGCCATCGATCAGATCCGGTTCCGCATCTCTAGCTCCTACACGGCGCATCGGGTTAAGGTCCAGGCAGAGCCAGGCCAGGCTGGGGTGGCGGGGGGCGGTGAGGAGCCACAGAGACAGGGGGCTGGGGCCTCCAAGGAGCCCGGGAAGGGAGACGTGGTTGGACAGAGCCCCTCAAAAGCCCAGAGCAGCAAAACTGATGAGAAGATGGGAGTCACACAGCTGAAGAATTTCCACCCCACCATAGTTCCAGGTCTCGGCCGCTCTCTGGGATTTCAGCCCAAGATGCCGCGCCTGCGACTGGTGCACATGTTCCTGTGGCACGTGATCTATGGCCATCCCTCCAGGAAGCTGCCCGGCTCGGGCACCAGAGCCGCGAAGGGACAGGAAGTTCTGAGGCGTGGCACGGCGGCCAATCGGAGCCATTCACTGCCCGCGAAAGCCAATCGGGAAGCGCCGGCCCCTGACAGCGGGGCCAGTGAGACGCCGGGCACTGCCCATGCCGAGGGAGACGTGGAGATCGGTGCCGGCACGGAGGTTGACCCGGTGCTCATCGATGAGACGGTGTACGTCAACGAGCTGTCCTGGAAGAGGTTCGTCCCGGCCACACCGGTGCACCGGGAGTATGGCCTCGGCTGGGCCCTGGCCAGCGACATCCTGCTGTGCCTGCCCCTGTCCATCTTCGTCCAGATCATCCAAGTCAGCTACAAGGTGGACGGCCTCGAGGACTACCTCAACGACCCCCTCAAGCAGCATTTTCTCATCCGGTTCCTGCCGGGGAAGATGAAGAAGCAGCTTTTATACAAGAGGAGGTACATCTTCTCCTTTTACGAGAACATGCAGCGCCTGTGCTTCATGGGGCTACTGCAGTTCGGACCGATGGAGAAGTTTCAGGACAAGGACCAGGTCTTCATCTTCCTGAAGAAGAAAGCCACCATCGTGGACACCACTCCCTGCGAGCCCCACTACAACCTGGTCACAGGCAGCCGGCCCTTCGAGAGGCGATTCTACACCCTCGACACCTCGCAGGACATCGAGAACTTCTGGTTCGACCTGCAGTGCGTCTGTCTCAACACGCCCCTAGGTGTCGTCCGCTGCCCTCGCATAAGGAAGGGCTCCTCGCAGGAAGGCCAGCCGGACCAGGAGGACCCAGAGGCGGCGCTGGAGGAGCTGCCGGCGGAGAAGCCCACGGTCCGAGAACCGTCCCGGCTGCTGGAGTATGCCAGGGGCAGGAAGGAGGTGACGGATGACGGGGTTATTCCAGGGGACGGTCAAGGGGCTGCAGGGATGGATTCCACCTTCTTCGGACACCTGAAGCGTAACTGGATTTGGACAAGTTACCTCCTCAACGCCAAGAGACCCGGCAGCTCTCTGGAGGGAAACCCGATGCTGAGACTGAAGACCTTTTTGACAAAGATGCCTCTGCCCTTCATGTCGGAGAACCGTAAGATGCACATGATCTCGGAGCCCCGACTGCCAGGAGCGCTGAAGGAGTTTGATGTGCTGGTGGAGCAGGAGCCGGGGGGCGAGTGCAGAAACGCGCGCGTCGTCGGCGGCAAGAGGCAGAAGCGCAAGAGGGGCAAGAAGGGCGTCGAGAAGAAggccaagaagaagaagagagAGGCCCGAGTGGAGACGAAGCACGTCCGCCCGCCCCGCTTCCACGACGTTGCCGACCAGAACGCCCTGCAGAGGATGACCCGGCAGCGCGTGTCCTGGAGTGCCCAGGAGGACGGCTTCCTCATGCTGTGCCGCGTCGCCAGCCACTTCCTCAACAGAAAGATCAAGAGGCCCTTCGTTCCCTGGCAAGTGGTGCGGGACCTGCTGCACGCCCAGTTCGAGGAGTCACTGGACAAGACGTCTCTGTCCGTGGGCCGCCGGGCGCGATACATCATGAAGAACCCCCAGACCAGCCTCAACTTCAAGATCTGTCTGGCTGAGGTCTACCAGGACAAACCCCTGGTGGGCGAGTTTCTGAACCGGGAGAACGACTACGAGAACCCAGAGGTCTGCTCGGCCGAGTTTAAGGAGTTCGTGGCCGTGCTGAGGCAGAAGTTCTCCACATCCACTGGGTATCTGGGCTTGAAGATCCCAGACACCAAGGAGGAGCTCTTCAGGAGGTTCAAAGTCTACGCCATTGGAGACCAAGAGGAGGTGGAGCAGAACGAGCCGGACATGCTGGCGAGGCACGAAGATATCCACTCCCTGGTCCTCAACAACCTGATCCAGAGCACCCTGGCGCTGTCCAACGCGCAGATGAAGTCCTGCCGCTCCTTCCAGACCTTCCACCTGTACAGCCGGTATGACGACGGCATCCTGTACGAGGCTTTCCTGCGCTGCCAGAAGAGGGGCCTGGTGAACCGGCGGCGCATCAGCAAGGTGTCGGAGCCCAAGAAGAGCCGGGCGCTGCCCTTCCTGCCCATGTCCTACCAGCTGTCCCAGGCCTACTACAGGTGCTTCACCTGGCGCTTCCCCAGCACCCTGTGCACAGAGGCGCACCAGTTCCTGGAGACGCTCCGGGCCGCGGGCCGGCAGGACCGGCCCAACACCTTCGTGTTCCAGGACCAGGCGGAGGCGCCGCCGGACCCGGGCATGGTGCTGTTCTGCCTGGACGCCCCGGGCGGCTGCTGCCTGGCCAGCCTGTCCCTGCTGATCCTGGGGCTGCTGTCTGTGGACGTGTCCATCCCGGAGCAGATCGTGGTGGTGGACAGCACCATGGTGGACAACGAGGTCGTGAAGAGCATGGGGAAGGAGGTGGCGGACGAGGACGACGAcgaggaggcagaggagggcGAGGGCAAGAGGAAGATCGAGGTGAAGGCCAGGCAGGCGTCCCACACCAACTACCTGCTGATGAAGGGCTACTGCTCCCCCGGCATCGTCAGCCTGCGCAACCTCAACACCAACGACAACATTGTGGTCAACTCCTGCCAGATGAGGGTCCGTCTGCGCAGCTCCCCCGCGCACCGCTGGTTCAGCACCGCAGagcCCTACGTGGCTGACGACCCGGCCTGGGGAGAGACCTGCCTGCCGCCTGGCTTCACCCGGCTGGTGCGCATGAGCAGCGACGACTCGGGCCGGCTGCAGCGCTTCAGCGCCTGGTGCATCGACCGCTGCGGCTACAGCGCCGAGGACCTGCAGGCCGTGCTGGAGCTGAGCGGCGTCGTGGAGGAGGCCCGGTGCTTCGGCTGCGACAGGCGGCAGCTGCGCGACCGCTTTGCTGCGCTGGAGGAGGTGGCGGGCGGGCGGACCAGGACGCTGTGGCAGTACCTGCAGGACCTGGTCGACCTAGAGGaggtggtggaggtgggggggaacaCAGTGCGCCTGGTTGCCATGAAGTTTCTGGACCCCTGGCTGCTCCACACGACCAAGAGGTGCGGCCCGAGAGCGGGGTCTGACAGCCAGGCCCAGCCCACCTCCAGGAAGAGGAAAGTGCAAGAGGACCCTGAGGAGGACGCCGCCCCCCCAAGGAAGATGGTCGCTGTCGATATGGACGGCGCGGCGGCAGGGGATGATGTCTCGGAGGAGCCGGGGGAGGAGAAAAGCCTGGAGACGTCCCCCGGGGGCAGCAGGGCTGGGGATTCCCCTGTGCTGGGCGGATCGAGCGACCCAGACCCGACACAGGCTGCTGCAGAGGCCCAGAGCACCGGCCCGGTGGACGAAGATGAAGGGGGTGCCAGGGAGGGCGGCGCGGAGGAGGACAGCCCAGAGGGGGACGCAGCACCATCTATCGAAGACCAACCAACGCCGGCGGACGCAGTGCCAGGGGGGGAGGCCGGCGCAGTAGATGAAGATTGCACTAGTTTCCCTCAGACGACCGCAGCGCAGAGTGTGGAGGACAGCTCTGAGCTGGAGAGGGTGAGCTTCATCAGCCGGCCCTGGCGCATCGTGGACGGCAGTCTGAACCAGCCTGTGTGTAAAGGCATGCTGGAGGCGCTGCTGTTCCACATCATGACCCGGCCTGGCGTCCCGCAGCCCGTCCTGCTGCGCCACTACAGCGGGGTCCTGCAGCCGGTCGtggtgctggagctgctgcagGCGCTGGAGGAGATGGGCTGCATCCAGAGGAGGTCCATCAGCCCGACCCCCCGGCCCTCCCTGTTctcccggcccggcccggcccagcTGAGAGAGGGCCCACCCCAGCCCGTCACCAGCGACTGCGTCTTCTACGAGCCGGCACTGGACTGCTGCCTGCGGCTGGGCCGGGTGTTCCCCCGCCAGCCCAACTGGAACAAGTGGGTCCAGTACATCCACACCTGAGAGGCCGGGCCGCCAGGGGCCACACAGTGAGGGGCCACAGCAGAGACGCACTGGGTCTGAGCTGTTTGTTTACTCTGTACAGTTAAGTGCTTGAAGGATAGgcagagatttttatttttattatttgtttgaaatgcttttttgtggtattgttattgttctgtTGTTAAGCTTGAATGACTTAAAATAAAG

Function

GO: NA

KEGG:

id description
K15199 GTF3C1; general transcription factor 3C polypeptide 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 210050 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 291430 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 385602 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 489550 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 513265 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 756185 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1087267 1864557 ~ 1865570 (+) True G114299
AMCG00018071 mRNA upstream 2853 760423 ~ 760701 (+) True AMCG00018071
AMCG00018070 mRNA upstream 3835 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 24271 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 91718 667954 ~ 671836 (+) True AMCG00018058
AMCG00018059 mRNA upstream 101438 657682 ~ 662116 (+) True AMCG00018059
AMCG00018072 mRNA downstream 94031 871321 ~ 889033 (+) True AMCG00018072
AMCG00018075 mRNA downstream 124894 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 141800 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 259060 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018084 mRNA downstream 484739 1262029 ~ 1265534 (+) True AMCG00018084
TU142799 other upstream 183850 575260 ~ 579704 (+) True G114053
TU142895 other downstream 93 777383 ~ 794790 (+) True G114123
TU142941 other downstream 94055 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 442489 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1170551 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1195636 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001381 True 2925 mRNA 0.56 19 NC_007112.7 58990121 ~ 59000239 (+)
grasscarp (Ctenopharyngodon idella) CI01000174_00051160_00054837.mRNA True 1522 mRNA 0.57 8 CI01000174 51094 ~ 54837 (-)