RNA id: AMCG00018070


Basic Information

Item Value
RNA id AMCG00018070
length 1815
RNA type mRNA
GC content 0.65
exon number 11
gene id AMCG00018070
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 746675 ~ 759719 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGTTGTGAGGTACCTGGCCGGGGAAGGCAGCCCCCTGCCCCATCACGACTGTGTGATTGTCCTTCACGACTCTGGCTCCCCCTggggggcagggcaggggctttcatttgaaacattgttGAAAAAGCTGGAGACACCGCACCACATCTGTTGTGCCCAGCAGCCGCGGCACGGCACGTGGAGGGAGCCCATCAACCCATACTATGTGAACATCGGGTACGCCCTGGCGCCTGCCACCAGCGCCAACGACAGCGAGCAGCAGAGCATGTCGAGCGACGCGGACACCATCTCCCTGACAGACAGCAGCGTCGATGGGATCCCGCCGTACAGGTTTCGGAAGCAGCACCGCCGAGAGATGCAGGAAAGTGCCAAAGCGAACGGGCGAGTAGCACTACCTCATATCCCTCGCACTTACCGGATGCCAAAGGATATCCATGTGGACCCGGAGAAGTTTGCGGCGGAGCTGATCAGCCGCCTGGAGGGCGTGCTGCGCGAGAGGGAGGCGCAGGAGAAGCTGGAGGAGCGGCTGAAGCGCGTCAGACTGGAAGAGGAAGGGGATGATGCAGACGTGTCGGCAGCCCCCTCCTTGGCCAGCCACAAGTTGCCCCCGGCACCACACCCCCCGCACTTCGGCCCGCGCTGCTCAGACATGACCTACAACGGGCTGCAGCTGCGCGACGCCCACGAGGAGAACCCCGAGTCCATCCTGGACGAGCATGTGCAGCGCGTCATGAAGACGCCAGGCTGCCAGTCCCCCGGGCCCGGGCGCCACTCGCCCAAGTCCCGCTCTCCGGACGGCGGCCTGGCGGGGAAGGTGCCTGGGCTGATGGCACCGCCAGCCCCGGTGCACGGCAAGCATCCGGCCAAGCCGGGGCAGAAGCCGGAGGGGGCCAACATGTTCCACCACAAGCACGTCTACCACATCCACCACCACAACATGCTGAAGCCAAAGGAGCAGCTGGAGGCTGAGGCGTCGCAGAGGGTGCAGAACACCTTCCCCTGGAGCGCAGAGCCGCACCACTACGCAGCCAAGGGGCGCAGCTACGCCGACAGCATGGGCACGACGGCGCCCGGGCCCGTGGAGATGCTCGGACACGGgaGTAAAGGCAGCACGCTGTCAAAGCGCGGCTCCAAGCCGGGCAAAGGGGATGAGGGCAGGACACTGGACGCACAGGTGCCCCCAGAGGAACTGGAGAGGAACCAGAAGATCATCCAGTGGATGATGGAGGGTGAGAAGGAGGCTGTTCGGCACAAGAAGGTGCCCTATGGCAGCAGCGCGGCCGTGAAGAAGGCACCCGGCCACGAGCCAACGAGGCCCAGCTCCATCGAGCGCCCGGGGGCCGTGCACCCGTGGATCAGCGCGCAGTTGCGCAACACGGTGCAGCCCTCGCACCCCTTCATCCAGGACCCCACCATGCCCCCCAACCCCGCGCCCAACCCCCTCACGCAGCTGGAGGAGGCGCGGCGCcggctggaggaggagaagaagaagtcGGGGACGCTGCAGACGAAGCAGAGCGCGGGCGCCGTCAGGCCCGCCTCCGTCCCCTCACTGGGCCTGGTGCCGGCCGTCTCCGACACAGAGCTTTCGGAGCCCGAACACAAAACGCAGAAGAAGCAGCCCTGTGAGAACATCGTGGTGGCCTACTACTTCTGTGGAGAGCCCATCCCATACCGGACCTCCGTCAAGGGCAGGATCGTGAGTGACGAGTTCGACTGCGGCGTGGTGTTTGAGGAGGTGCGCGAGGACGACGCCATCCTGCCCATCTTCGAGGAGAAGATCATCGGCAAAGTGGAGAAGATCGACTGA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0090244 Wnt signaling pathway involved in somitogenesis biological_process
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0001743 optic placode formation biological_process
GO:0055001 muscle cell development biological_process
GO:0007257 activation of JUN kinase activity biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0021881 Wnt-activated signaling pathway involved in forebrain neuron fate commitment biological_process
GO:0008219 cell death biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0045599 negative regulation of fat cell differentiation biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0031101 fin regeneration biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0060823 canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation biological_process
GO:0030910 olfactory placode formation biological_process
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02157 AXIN1; axin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 193171 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 274551 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 403173 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 507121 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 530836 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 773756 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1104838 1864557 ~ 1865570 (+) True G114299
AMCG00018068 mRNA upstream 7392 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 74839 667954 ~ 671836 (+) True AMCG00018058
AMCG00018059 mRNA upstream 84559 657682 ~ 662116 (+) True AMCG00018059
AMCG00018062 mRNA upstream 109588 622978 ~ 637087 (+) True AMCG00018062
AMCG00018061 mRNA upstream 130880 612489 ~ 615795 (+) True AMCG00018061
AMCG00018071 mRNA downstream 704 760423 ~ 760701 (+) True AMCG00018071
AMCG00018069 mRNA downstream 3835 763554 ~ 777290 (+) True AMCG00018069
AMCG00018072 mRNA downstream 111602 871321 ~ 889033 (+) True AMCG00018072
AMCG00018075 mRNA downstream 142465 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 159371 919090 ~ 921114 (+) True AMCG00018076
TU142799 other upstream 166971 575260 ~ 579704 (+) True G114053
TU142895 other downstream 17664 777383 ~ 794790 (+) True G114123
TU142941 other downstream 111626 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 460060 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1188122 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1213207 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051989 False 3049 mRNA 0.54 9 NC_007114.7 43580962 ~ 43646733 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_02123765_02158243.mRNA True 2502 mRNA 0.56 9 CI01000046 2123765 ~ 2158243 (+)