RNA id: AMCG00018071


Basic Information

Item Value
RNA id AMCG00018071
length 279
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00018071
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 760423 ~ 760701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTGTGATGCTGGGCGAGGTCGCGAGGGGTGGAGAGAGGAGCATTTCAGAGACGTGTTCGTGTCCGGCCTCCTGCTGGAGCTCTGGCTGCTGTCGGTGCCGGAGCCGCTCTTGCAGGGCTGGTCCTCTCTGGGCGGCGCCAGGTTTAGGTATTCTGAGCGCCGCCCGTCTCGGCCCGGTGTGAGCACGACGCCCCCCGCCAACCCAGCGAAGCGTCATTTGCCCGCTGCTGTACAAACCCTGCCTGTCCTTCTGTATAttggaagagaaaaataa

Function

GO:

id name namespace
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0035315 hair cell differentiation biological_process
GO:0042490 mechanoreceptor differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0060563 neuroepithelial cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 206919 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 288299 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 402191 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 506139 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 529854 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 772774 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1103856 1864557 ~ 1865570 (+) True G114299
AMCG00018070 mRNA upstream 704 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 21140 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 88587 667954 ~ 671836 (+) True AMCG00018058
AMCG00018059 mRNA upstream 98307 657682 ~ 662116 (+) True AMCG00018059
AMCG00018062 mRNA upstream 123336 622978 ~ 637087 (+) True AMCG00018062
AMCG00018069 mRNA downstream 2853 763554 ~ 777290 (+) True AMCG00018069
AMCG00018072 mRNA downstream 110620 871321 ~ 889033 (+) True AMCG00018072
AMCG00018075 mRNA downstream 141483 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 158389 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 275649 1036350 ~ 1041531 (+) True AMCG00018081
TU142799 other upstream 180719 575260 ~ 579704 (+) True G114053
TU142895 other downstream 16682 777383 ~ 794790 (+) True G114123
TU142941 other downstream 110644 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 459078 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1187140 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1212225 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile