RNA id: AMCG00018072


Basic Information

Item Value
RNA id AMCG00018072
length 6343
RNA type mRNA
GC content 0.51
exon number 22
gene id AMCG00018072
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 871321 ~ 889033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGGTTTAGCGGAGTCGGCAGCGGGGTGGCTCTGTCTGCTGTGGGCTGCTGGAAGAGTCGCATCAGGAGGAGCCGAGACTCGGAGCATTGGCACAGCGTTGGCACCGCGTTGGCACCGCATTGTAGGGTTACCTGCCCTGGACTCACCTGCACGCCTCCTCCCAGGATTACAGCGCTTTCCCCGGGACTGGACTGCGGATAACAACTCAACATGTTCAAGAAAAAGAGCTCGAAGAACAGCGTTACTATAACGCAGCCCAAGAAGGTGGCGAACACAGAGCTGACGACCGTCATCGAGAGGCTGCAGAGGAATGCCGACAAGGTGGAGAAGAACATCTTGGAGACCGAACAGAACCTGCTGAAGGATGTGAATAAGATCAATGAAGGGAAACCTACGATGTACCAGGATGACACCAACAGGAAGATCGTGAGCTCCACGGAGCTGCTGGATGTGCTGGACCAGGACGCCAAGAGAGCGATCGCCCTGAAGCACCCGCAGGCGGAGATGATCGAGCAAGATATCaagcagctgagagagagggtgaagAAGCTGCGTTTGGACCACAACCGGATCTACAACATCACTCGCAGCGAGGGCATTCCCAGCGTGGACTGGGGACGAATAATTGACGAGAAGCAGGCAAACCTCAACAACAAGACTTTtgggaacgacctgcccacagTGGACAACCAAGTGGAAGAGCACAACATTTTCCACAGTGAGGTTGAAGCCATTGGCCCCCACATCACTGACAGCGACGACAAGGCTTACGTCAGCGGCCTGCAGGTGAAATACAACAAACTCCTGAATGGGTCGGCTGTCCGTCAGCGGGACCTGCACACCCTGAGGGACTACATGCAGCGCTGCACTAACGAGCTGTACTGGATGGACCAGCAGGCAGAGGAGCGCATCAACTACGACTGGAGCAATGCCAACCTGGACTACCCCACCCGCCAGAAGCACAAAAGTCTGGAGTCCAAGGAGGCCACGATCACCAAGCTGCACGACGATGGAGAGAAGCTCTTGGCCTCCGAGCATCCAGGAAAGAATGCCATCGAGGCGCACATGGAGGCGGTGCACGCGGACTGGAAGGAGTACCTGAACCTGCTCATCTGCGAGGAAAACCACCTGAAGCACATGGAGGAATATCACAAATACCATAAAGACGCGAGAGACACCCAGGACATGCTGAAGAGGATGGACACTGAGCTGAACCAGAAATACAGTCCCGAGTTCAAAGACATGTACCAGACTGAGGCCATGATACGCGACTTGGATGACCAGGCGAAGGCGATGGATAACTACGATGAGAGGGTGAAGGCCCTGCAGAAGCGGAGCCAGCAGGTGCTGCCACTGAAGTACCGCCGGGAGACACCCGCCAAGGCGCTGCCCGTGGAGGCGCTGTGCGAGTTTGAGTCCGACGAGGGACAGATTGCCCGGGGGGAGAAGTACACCCTCATCAAGAACAGGGGTGCCAAATGGGACGTCAAGGACTCCGCGGGACGAAACATCACCGCCCCGGCCGTGTGCTTCATGATCCCCCCCACGGACACCGACGCCATCGGAGTGGCTGAAAACCTGGCGAACCAGCAGAAGACCCTCAAACAGAAGGTCTCCAGCAGCAAAGGGACCCTCATGAAGCGCTTCGATGAGCTCAAGAAGGAGAACACTGGAAGCAGTGACAAGCAGGAGCAGCAGTGTCGCCAGATGATGGCCAGCCTGGACAAAGTCAACAGCGACCTGGACAAGCAGGAGAAGGCACTGTACACTCGCTTGCGCCCCCCGCTGGAGCAGAGCCGCCCCCTGCAGGACAGTGACGAGCGCCTGCAGGACCTGAAGGACATAGGTGCAGCTGTCCGACGTATCGAGCCGGAAAAGACCTCCAAGGTCAACGAAGCCGAGACGTTCCTCGCCTCCAAGCCCAAATGTGCCAGCGCCCCCCAGCTCTACTCTAAGGTGGACGAGgtcaacaacaaatacaacaagGTCAACGTCCTGCTGCAGTGCTCGGAAGACAAGCTACAGAACTCAAACCGTCTGGAGAATTCGCTGCAGAAAGGGAAGAGTTTGCTGTCCACCTATGAGAATAAACTGGCCCGAGAAGAAGTCGCCCCAGCGGATTTAAGCGCACTGGAGAGAACTCAACGAGAGCTGGCTGAAATGTCCTCGGATCTGAGGGCTAAGAAGTCGGTCATTACTGAATCGGAGCAGAACCTTCGTGCTGCAAAGTCCAGCTGCGAGAACATGGCCAACAAGCTGCAGGAGCACTGCCCCGACATTGACCGGCAGGAGGCCGACGTGCGCAAACTCAGCAAGCGCTACGACAACCTCAACCAGCAGATCGACTCCAGGTCACAGAGTCTACAGAAAGCCAAGTCTTCATACAACAACTACTACAACGACTACAACAGTCTTAACACCTGGCTCTCCAGAGTGCCTAACTACGAACCGAAGGAAACCGACGATGTCAGGCAAATTGAATCTAAACTGAAGAGCCAAAGAAACCTGCTTTCTGACATCGCAAGGAAGGAATCAGAACTGAAAAATGTGTccagaaacacacagcagtaCCAGCAGTCGATCAAGGAttatgaaactgaaactgagaaATTCAAATCAATTCTTGACATTGAAGACGGTCTGGTGCCACAGAGTTACAAACGAACCCGGCTCGACTCACCAGCTCTCAAAGTCAAGAATGAGGCGGCGGCCATTGAGTCGAAGTTCACTGAAGTCAGTGCTGTAAACAAGCAAAGACTGCAGAACCTGGAGTATGCACAAAGTCTCCTGAACCAGCAACCAGAGATCCCCATCATGACACAGCACGTCCAGTCCCAGATGGCGGCCGTCCCTGGAGAGGAACCCTGGCGGATAAAGAAGCAGCTGGAGGATGAGATCCAGCGCCGGGagcagctggagagagagatcCAGACCATCCAGACAGATATTTATGTGCTGGAGGGTCAGAAACCACAGGACACCATCTTGAAGAAGGAGCTGATCAAGAAGGTCCCCGACCCGCAGCTGGACGAGGAGCTGAATAAACTCCAGCAGAAACTGGCAGAGGAGCAGAGACTGAGCCGGGTCCTGGAGAACGAGATGGAGTCGCTGCGCATCAAGGTGCGTGGGTTCGAGACCGAGAAGCGAGAGGGTGCCCAGCAGTACATGGTGAAGGAGGTCCTCCGCATCGAGAAAGACCGAGACCAGGAGCAGGAGGTGAGGAGGCTGAAGGACGAGCTGGAGGAAATCCGGAGGCAGAAGATGATCAAGGAGAATGAAATCGTGCAGCTGAACCAGCGGCTCACCATCCTCGCAGAGGAGAAGTCAAAAGAACAGGAGAAAATCATGGAAGAAGAAGTCATCAAAGTTCAGAATGATCCCCAACTGGAGACTGAGTACCGGCTGCTGCTGGAgagcaaacaaaaagaaattgACTCCAGGAAAACCCTGGAAGACGAACTACGATTCCTGCTGGAAAAACTGAAGAGGCTAGAGAAGGAGAAGGCCATGGCTGAGGAAAAGATCACCATCAAGGAAGTTCTGAAGGTGGAAAAAGATGTGGCTTTCGAAAGAGAAGTGGAAAATCTCAGGCGTCAGTACGAAGATGAAATGGCCAAAAACAGGTCTTCTCAAAGGGAACAAACTGACCTCTTGAGGAAAATCCAAAGCCTTGAGGAGGAGAAATCAAAAGTCATCGTTCAGGAGAAAATGCGTGAGATTGTCCGGCCTGATCCCAAGGCTGAAAATGAGGTGGCCAACCTGCGCCTTGAGCTGGTCGAACACCAGAGAAGATACAGAGATGCAGACGGTCAACTCAGAACCCTGCAGGATGAGCTGAACATGCTGAGGAATAGAGGGCCACAGATCGAATACAAGGAAATCATCAAGGAGGTCATCAAGTACAAGATGGACCCAGAGACGGAGAGGGAGCTTGAAAAACTCAGAAACGAGATCGTTGACAAGACGCACCAGACTGAGAAATCAGAGCTGGAAATCCAGCAGCTAAGGGACGAGATCCAGAGGTGGAAGGACACCAAACCACAAGTGCAGGTGAAAGAAGTGTTGAATGAGGTCCTGCAGTACCGCGAAGATCCGAAGACCAAAGAGGAGGTGGAAATCCTCAAGAGGAAGCTTGCCGAGGAGCAGAAGAAGCGCATGGACCTGGAGAGGGAGAAGTCCGCCAATGAGGAGAAGATACGCCTGAGGAAGATCGACCTCTCCCAGGTGAGGGAAAAGGTAGTCCAACAGGAAGTAGTGAAAATGGAGGAAGACCATGTCTTGAAATCTGAATGCCAGACCTTCTCCCAGAATATCAACAATGAGCAAAAGCAGAAGGAGTCACTTCGAGATGAGCTGTACAAGCTGCAGCGACAGAAAGCTGACCTGGAGCTACAACTGGAAGAGCTGGAACGCGAACGCAGAGCCCGGCGAGAGTCGGAGCTGGAGATCCAGAGGCTGCGAGTCCGACTCAACGAACTGGAGATCCGGGACAAGGAAACCCGGGAGAAGGTCACTGTGAAACAGAAGGTGGTGCTTCAGCAGGATCCCCAGCAAGAGAAGGAATACTCCCTCCTGAAGCtgcaggtggaggaggagaggcaCAAGCGAACTCTCCTTGAGAAGCAGCTCGACACGTTGGTGCAACAGCATCTGACGCTGGAGAGGATGGAGGTGCGGGAGAAGGTGGTGCGCTCTGAGAAAGTCCAGGTGGAGAAGGACCCAGAGACGGAACTGGAGATCGAGCGGCTGAAGAAGACCCTGGAGGAGGAGTCGAAGAGACGCCGTGAGCTGGACCAGGAGCTCAGCACCCACAACTCCAGGCTGGCCGACATGGAGTTCAACCACACCAAGTCTTCCAAGGAGCTGGACTACATCAGGGAGGAAAACAGCCAGCTGGAGCAGGAGAACCAACGTCTGCAGAACGAAATCAGGAAACTGCAGTCGGAAATCCAAATCACCATCAAAGAAACGAAGCACATCACAGAGTCCTCTCCGTCGGACAGTGGGAGGAACGTAGAGCTGAGGCTGACATCTCTGCAGAGGGAGCTCGCCGATCTGAGAAGCATCACGAATGAGAAGGATCGGGAAATTGAGAAATTGCAGAAGAGCCTGTCTGCCATGAAGGTGAAGAAAGAACAGAGGGAGAGCCATCTCCGCCGCTCCATTGTGGTCATCGACCCCGACACCGGCAAAGAGATGAGACCGGAAGAGGCCTACAAACTTGGCCTCATCGACTGGAAAATGTTCGTCAACCTCCAAAGCCAAGAGTGCGACTGGGAGGAGATCTCCGTCAAAGGCCCCAAAGGAGAGTCGTCGGTCCTCCACGACAGGAAATCTGGAAAGAAGTTCTCCATCGACGATGCCTTAAAGAACGGCCTCATCAACAATCGCCAGCTGCAGCAGTACCACAACAAAGAGTTGAGCATCCAGGAGTTTGGCATCATGGTTTCCGGCAGaaccaaatgaaaatgaaaaatcagttattattattggacTGACTGGAGGACTTGTAGGATTTTAGTTTACCTTTGTTACGCCTTCAGCTTTTTCTTACAAATTCCTCACAAAGTCTGCTTGTACCAAAGAGTGGAGAAGGAAATCCAAATGAAACCACAAATGCAACACAATGTTTCTGTGCCTAGCGGTCGTAGCTACACACTTCTCAATGGTGCGATTTCTCTGTTCAggtttacaaaataatgtactgccATAGAATACTTAACATTGTTACTTAACttaatatcaaatgtatttaccGCAGTAAGATGGCAATTAAATACAAGTGTCAACCTACATTATGTACCTTTATCcataatgttttgaaatgcagtctTCTATCAAATGTCTTCCCTGGAAATGTTAGAAACCTTGTAAATGTATGCACTTGTGATGtaagattaaaatgtaacaatagtTAGGTAAGGAATGCCAAGTATAAGTTCACAACCAAAGAGACCgttaaaaccaaaaatgttaCCGGGTAAACAATAACCCTTTACTTGTTCAGATTTGAAACCAAAGCACTGATGTCTATGATATACAGAGAGCTCTCTATCGAACTCATATACTGAAAAAAGTGGGTTTTCTTTGCCAAAAAGTAGGTACTGGTGGTTATTTTAGCTTGGTAGAGTGGGGACCAGCTTCGCACAGCTGTATGTACTTGCTTCGGGTTTAATAATGAGGGGAAATATGCAGATTCTTATGCATGCAGTTCTGTTTAGATGACAACAAACAAGTCTATAATTATAccttatgaatatattttaaattgtgcaacAATTGTTAGTATGTTGAAGGGATGAGGTTTAAACAATGCCAATAAACAGCAACCTGATGGTAC

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K10386 PPL; periplakin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 317817 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 399197 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 273859 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 377807 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 401522 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 644442 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 975524 1864557 ~ 1865570 (+) True G114299
AMCG00018069 mRNA upstream 94031 763554 ~ 777290 (+) True AMCG00018069
AMCG00018071 mRNA upstream 110620 760423 ~ 760701 (+) True AMCG00018071
AMCG00018070 mRNA upstream 111602 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 132038 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 199485 667954 ~ 671836 (+) True AMCG00018058
AMCG00018075 mRNA downstream 13151 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 30057 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 147317 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018084 mRNA downstream 372996 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018091 mRNA downstream 619961 1508994 ~ 1511372 (+) True AMCG00018091
TU142895 other upstream 76531 777383 ~ 794790 (+) True G114123
TU142799 other upstream 291617 575260 ~ 579704 (+) True G114053
TU143029 other downstream 330746 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1058808 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1083893 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 1087971 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 1090013 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile