RNA id: TU142941



Basic Information


Item Value
RNA id TU142941
length 949
RNA type TUCP
GC content 0.56
exon number 7
gene id AMCG00018072
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 871321 ~ 889033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGTGGCTCTGTCTGCTGTGGGCTGCTGGAAGAGTCGCATCAGGAGGAGCCGAGACTCGGAGCATTGGCACAGCGTTGGCACCGCGTTGGCACCGCATTGTAGGGTTACCTGCCCTGGACTCACCTGCACGCCTCCTCCCAGGATTACAGCGCTTTCCCCGGGACTGGACTGCGGATAACAACTCAACATGTTCAAGAAAAAGAGCTCGAAGAACAGCGTTACTATAACGCAGCCCAAGAAGGTGGCGAACACAGAGCTGACGACCGTCATCGAGAGGCTGCAGAGGAATGCCGACAAGGTGGAGAAGAACATCTTGGAGACCGAACAGAACCTGCTGAAGGATGTGAATAAGATCAATGAAGGGAAACCTACGATGTACCAGGATGACACCAACAGGAAGATCGTGAGCTCCACGGAGCTGCTGGATGTGCTGGACCAGGACGCCAAGAGAGCGATCGCCCTGAAGCACCCGCAGGCGGAGATGATCGAGCAAGATATCaagcagctgagagagagggtgaagAAGCTGCGTTTGGACCACAACCGGATCTACAACATCACTCGCAGCGAGGGCATTCCCAGCGTGGACTGGGGACGAATAATTGACGAGAAGCAGGCAAACCTCAACAACAAGACTTTtgggaacgacctgcccacagTGGACAACCAAGTGGAAGAGCACAACATTTTCCACAGTGAGGTTGAAGCCATTGGCCCCCACATCACTGACAGCGACGACAAGGCTTACGTCAGCGGCCTGCAGGTGAAATACAACAAACTCCTGAATGGGTCGGCTGTCCGTCAGCGGGACCTGCACACCCTGAGGGACTACATGCAGCGCTGCACTAACGAGCTGTACTGGATGGACCAGCAGGCAGAGGAGCGCATCAACTACGACTGGAGCAATGCCAACCTGGACTACCCCACCCGCCAGAAGCAGTACGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 317841 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 399221 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 283913 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 387861 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 411576 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 654496 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 985578 1864557 ~ 1865570 (+) True G114299
AMCG00018069 mRNA upstream 94055 763554 ~ 777290 (+) True AMCG00018069
AMCG00018071 mRNA upstream 110644 760423 ~ 760701 (+) True AMCG00018071
AMCG00018070 mRNA upstream 111626 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 132062 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 199509 667954 ~ 671836 (+) True AMCG00018058
AMCG00018075 mRNA downstream 23205 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 40111 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 157371 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018084 mRNA downstream 383050 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018091 mRNA downstream 630015 1508994 ~ 1511372 (+) True AMCG00018091
TU142895 other upstream 76555 777383 ~ 794790 (+) True G114123
TU142799 other upstream 291641 575260 ~ 579704 (+) True G114053
TU143029 other downstream 340800 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1068862 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1093947 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 1098025 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 1100067 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile