RNA id: AMCG00018075


Basic Information

Item Value
RNA id AMCG00018075
length 3723
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00018075
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 902184 ~ 912776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACTCCGCACCAAAATGGCACTGCGTGACGCCCCGGGCAAGTCATGTGACCTGAGTGGGTGTGTTCTCCTTCCCGGCATGCACTGCGACGCTTCAACAACATTTCTAAGATGGCGACTGTACATCTACGGATCGGGGATTTGGTTtgGGGGAAGTTGGGACGATATCCACCTTGGCCAGGGAAGatcgTAAGTCCTCCGAAGGATCTGAAGAAGCCAAGAGGCAAAAAATGCTTCTTTGTGAAGTTCTTTGGCACTGAAGATCACGCTTGGATAAAGGTGGAGCAGCTGAAACCATACCATCCCCACAAGGAGGAGATGATAAAGATCAACAAGGGCAAGCGCTTCCAGCAGGCCGTGGATGCGGTGGAGGAGTTTCTGAAGAAAGCCAAGGGCAAGGAACAGGCGCACAACTCCAGCAGCTCGGAGGACAAAAGCAAACTGACGGCGGCCGATGCGAAGGGCAGGAAGAGCGCCGCCAAGACAGTGAAGTCTCTGATGGAGGACGAGGAGGATCTGGGGTCTCGCAAACGGGGCCGCCCCCCGAAAGACGAAAAGGACTTGACGGACCCAGAGTCGTCCTCCGTGCAGCGACTCGTGGCCGGAACCGTGTCGGGATTCAAATGGGAGACTAACCAAGTTCAGGAAGACCCTCACTTCCACCACTTTCTGCTCAGCCAATCTGAGAAGCCAGCATCCTCGTTAGAACCCATCAGCAAGAGACTGAAGATCATAGAAGAGGACGCCGGATCGACGTCGATCCAAGCGGCCGACAGCACGGCGGTCAACGGCAGCATCACCCCCACAGACAAAAGGATAGGGTTTCTGGGTCTGGGTCTGATGGGAAGTGGCATCGTTTCAAACCTGCTGAAGATGGGTCACATCGTCACTGTGTGGAACCGCACCGCAGAAAAGNNNNACCTGTTCATCCAGGAGGGGGCCCGTCTGGGTCGGACTCCGGCCGAGGTCGTGTCCATGTGTGACGTCACCTTCTCCTGCGTCTCGGACCCCAAGGCCGCGAAGGACTTGGTTCTGGGCCCCAGTGGAGTTCTGCAGGGAATCCGACCCGGGAAATGCTACGTCGAAATGTCCACTGTGGACCCAGAGACGGTCACAGAGCTGTCGCAGGTAATCACGTCGCGGGGGGGGCGCTTCCTGGAGGCCCCCGTGTCCGGCAGCCAGCAGCTGTCCAATGACGGCATGCTGGTGATCCTGTCGGCAGGGGACCGGACCCTCTACGAggactgcagcagctgcttCCAGGCCATGGGCAAGACCTCCTTCTTCCTAGgagAGGTGGGGAACGCAGCCAAGATGATGCTCATCCTCAACATGGTCCAGGGCAGCTTCATGGCGACCATTGCCGAGGGGCTGACGCTGGCACAGGTCACCGGCCAATCGCAGCAGACCTTCTTAGACATCCTCTGTCAGGGCCAGATGGCAAGCACTTTCCTGGACCAGAAATGCCAAAATGTTTTGCAGGGAAACTTCAAGCCTGATTACTATTTGAAACACATTCAGAAGGACCTCAGGTTAGCCATCGCAATGGGTGACTCTGTCAATCATCCCACGCCAATGGCAGCAGCGGCCAACGAGGTCTACAAGAGAGCGAAGGCCCTGGACCAGTCGGACAACGACATGTCGGCCGTGTACAGAGCCTACATCCACTAGAGCCGCGGACACCGGCGACGCGCTGGACCATCCTCTcgactttttcttttctccatttacTCTTCTAAACGAATTCGCCCCGATTCTGCCAGCCCGGCGATCGTGataccccgcccccccacctctcccagGTCCGAGGGACACAGCGGTTCAGTGTTGACGCCTGACTTTTGCACTGACCGTGCCACCGACGCCCCGAGCGAGTGCGTCCACCCCCCCGCCGCGCTCTGTCTGCCCGCCCGCGCCGCCGCGGGGGGGAAGTAATGCAGTGTGTGAGGCTGGAGTCGGCGCCGGTGCAGAAGGTCCACCCACGATGCCCTGTGGTTTAATATGATCGGGTTTAGGATTCAGAGATTCGGTTCCGATGCATACATGTTTCCTAAAagatttgcagttttatttaacTTGCGGCATTTCGCTTTTTCCTATGAAtgtcaagaataaaaaaaaattatggaaaaaaatatatatatttgcttgtttaatattatgaaagaaaaaggcTGGAGAAGCACCAAGAAAATGCCACTGCAATGCCTTAATAgcgtccccccccccccaattaaagatgtatttatttatttaagcctCCGGAGATCCGTCTCGGCCTGGACGACACGAGAGCAGGGTGTCGTCCTGTCTTGGACGTTGAGGATATTTAATTGCCTTAAAGCGCCGTAATTTATTTCCTGTGTCTTGTACCATTATGAAGAACGGTATCGACAGGACCTGCCATCGGACAGACTGTTAATCGTTCGCGAAACCAAAACGCGTCGGCGGCAAACCGTCACTACTTTCCATAACGATGGCggctgtttgtttattgttgcgGTCGTAGCGTTCGGCACTGTTCGGTGTCTTCCTCGCCAGTTAGACCAGTGTGGTCTGCGGTTATATCCTAAACTGCAGTTGGCAAGAAATCCTCATTAAATGGCTCTATTTGCCACATATATAAGGATTGACGTTCATAATAAAGTAGCTGTACAGCAGTTTCCCGTACTTATTTTAGCTCGTTCTTTTAGGAACCACACGTTTCCTTACTTCTGCCTTAACCCTTCGTGGGTTTGAAGAATGACAGTGTTGACTGGAAGATGTCCTGATTTCTAGTAACTGAATACAGATTAAACAGTATGGAGGCAGTGGGTCACTGGGGCTCAGAACAGCAAAAGAAACCTGCATTACTTTGAGTTAGGAGATAAAGGTCACAGACAGAGCTTGCACAAGAACAATATTTTGATAAGTTTTGAATGCTTCATTTCCTggccaaaaaaagaaaagtatgaactactttttgtaattgttttatagcTGTTACCATGGTAGTAAATATTCTTTACTATAATACAAGCTGTACAATAAGCAGAGCCgtacattttaaatcctttCAAGCCGTGAGCAACCTATGCATACTGCCACATTTCACTTGGATTCGTTTCTCTTTTGCACGTGAATATCATGAGTTATCTAAATCGGTTTTACCcgttttaaagaacattttctaTTACCAAATACAGAATTTAAAGGATACTTATTTACCAAAATAGGATTTAATTGCTTGTGTATGGGTGGAGATTCTTATCCAAGACGGTGGGTGTATGAccaccattttcttttttggttataatttaatctttttaacatttgtaaatagCCTGTCGGAGTTGAAGGGGTACAATGAATTACGTTGGGGGCAAACAAGGCTTTCGTTTAAAGAAAAGGATTCTACTGAATCATTAATCATCTGTTGTCTTAATACTGTAGTTGGTTCTGTTGAGTGTTTGCCATCTAAATGTTTTCCTATATTTTATCCTGTTCTGTTATAAATGGGTTCTTAATAAGTGGCAGAAAAAAGAACAGCTTGCTGAAAATATCCAGCACTGGATAGCAAAGTTACTCATTGTTcgatatctttattttttttctgtaaaggaAATTTTGCTGTTTTGTTAAGAAATGTCTATCGTTTGTTATGtaagtgaaaatgtgtttttttctttttttttctttgtgcagTTAACAACAGCCtctcacaattaaaacaaacaaacaagg

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0005634 nucleus cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 348680 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 430060 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 250116 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 354064 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 377779 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 620699 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 951781 1864557 ~ 1865570 (+) True G114299
AMCG00018072 mRNA upstream 13151 871321 ~ 889033 (+) True AMCG00018072
AMCG00018069 mRNA upstream 124894 763554 ~ 777290 (+) True AMCG00018069
AMCG00018071 mRNA upstream 141483 760423 ~ 760701 (+) True AMCG00018071
AMCG00018070 mRNA upstream 142465 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 162901 737140 ~ 739283 (+) True AMCG00018068
AMCG00018076 mRNA downstream 6314 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 123574 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018084 mRNA downstream 349253 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018091 mRNA downstream 596218 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018097 mRNA downstream 836453 1749229 ~ 1752065 (+) True AMCG00018097
TU142941 other upstream 23205 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 107394 777383 ~ 794790 (+) True G114123
TU142799 other upstream 322480 575260 ~ 579704 (+) True G114053
TU143029 other downstream 307003 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1035065 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1060150 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 1064228 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 1066270 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile