RNA id: AMCG00018077


Basic Information

Item Value
RNA id AMCG00018077
length 1896
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00018077
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 922278 ~ 926739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGTGCAGAGATGCGCTGAAAAGCCCTCAAACAGCACGGAAACTGGATATACAGGAATAAGTACATGATTCAAACAGGCTGATGTTTTGATCTGATGTTTATATGGAAATGAATTAAGAAAAGGGTGATTTTATAGCGCGCCTCTCTCTTGCCAGGACTCGACGATGCAGAAGAGAGACATTCAGTCGGAGCTGCAGAGCCAGTTCAACGATGTTGTCAGCCGGCTGCAGTCCAAACAGATGTTCCAGTCGGACTGGGACATTGCTTCCTTCGCCATTTTCTTCATCTTTATCGGCACCGTTCTGCTGCTGGTCGTACTGGTTCTGatccgctgctgctgctgctgctgctgcgacACTGCCGACAAGCCTCGCCGGACCAAAGTCGGGGTGGACAACTATGCGCTGGAACCATAAGACACGGGTCTGGAGACAGAGATGGGAGTCGGAGGGAAAAGCATGATTCCACTCTCCTCACCTGTGCAAAcctgtacaaaaataataatgatgccaGACACCGTGCCAAGCTAATCAACCTTGTGATCTGTCAGGAAAATTATCACCACAGTGCCTAATCTGCAAAAGACAATAAGGAATGAAAGTCTTTAGGACCAActttatgattatttatatacacagataTGTGTATATCttaattggaagaaaaaaaaaaaaaagtatatagatatatataaaatgtattttctgtatccAGGATTTGaagaatacatgttttaataattgtaaatgtgttgaatttttttatatatatatatacatattagaaaagaaaatcaatccaACACTTCTGTGCTGCTGAAAATCACAGTCCTGCAGCCCAATAACGTAGATTTGTTAAAGTCTTAGACAAGGCAGGACAGCGTGCCCTGCAACCGTGTGTGGAGAACATAACTGgctacaaaatgaaaatatattattgagaagatttttttaatgacttgttTTGCCATGGCGTAGATTTACTTACAAGTTAGCCTTGCTTTGCACTTGGGCGTAAACAGACACACCGAGCCCCTCGCACTCGTGGGATGCCTCAGTGCGGAATGTAGTTCGATCTGTCCGCTTGCGTTTGTTGATGCACGTTCCAGTCTCGGTGTGTGTGCAGATGCTGCACAGTGAGAGACGGCGTGAGAGTGTGATCGGCCGCAGGTGACgaagcacaaacaaacactcgGTTAAGAGCTTCGCTGCAGCAGAGACCAGGGTGTTAATGAAGGCGTCCTCGTTAGGCCAGAGTGGACACCCCGGAGCGAGGTGCTGCGGGCGGAGGGCTGGGCGCCGACTGTGGGTCAAGGTTGCCTGCGCGGTGACTGTAGCGGTAGAGCAGTGAAATGTTCCTGCTTCGCCAGCAGTGGTGCCAGCCCAAGCCCAGGACAGCCCTGGTCCAGCAGCGTTCAGAGGTCTGTTTACAGCACCGGCTCCTCAAGGCATTGTGGGAACTGGTTAGCAAAAAATTACTTGAGCTGTGTAATTAGGAGCACAGGTGTCCTGGGAAACCAGAAGACTGTCGCAGCCCCATGGGGGGAGAGCGATACAGACACTAAGCTAATCcaatgcaattaattattattaacagtacaAATGGACTTGCCAGCATCAGTGATTTAACTGCACAACTAAAGAGCACGAGCAGTGCGGCTCAGATCCCGGTCTCTGAGACTGTGCGGACATCACCAGGCACTCAGGAAGAGGCAGACGGCagcgagagagaaaatgaaagaggcAAGTTTGCATAAAGACAATCCCTGGAGCCGGCACCGACACCCTTAGTTTTGTCTAAGAATCTTCTCACGGTGACAATCCTGCGtcgatgtttgtttgtttcccccccccgGGTGTAAACTAAATCGCTCAATAAAATCTTGTTATTATGA

Function

GO: NA

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142981 lncRNA downstream 8637 913231 ~ 913641 (-) True G114183
TU142977 lncRNA downstream 18435 902320 ~ 903843 (-) True G114179
TU142957 lncRNA downstream 33190 879311 ~ 889088 (-) True G114166
TU142932 lncRNA downstream 121807 796993 ~ 800471 (-) False AMCG00018074
TU142784 lncRNA downstream 422760 498327 ~ 499518 (-) True G114044
TU143020 lncRNA upstream 236186 1162890 ~ 1166493 (-) True G114213
TU143085 lncRNA upstream 341589 1268293 ~ 1268816 (-) True G114264
TU143095 lncRNA upstream 586289 1512993 ~ 1513642 (-) True G114273
TU143110 lncRNA upstream 606752 1533456 ~ 1534985 (-) True G114286
TU143139 lncRNA upstream 825192 1751896 ~ 1846771 (-) True G114304
AMCG00018080 mRNA downstream 2894 915840 ~ 919384 (-) True AMCG00018080
AMCG00018078 mRNA downstream 20610 890097 ~ 901668 (-) True AMCG00018078
AMCG00018073 mRNA downstream 81356 802720 ~ 840922 (-) True AMCG00018073
AMCG00018074 mRNA downstream 121906 777387 ~ 800372 (-) True AMCG00018074
AMCG00018066 mRNA downstream 254367 662249 ~ 667911 (-) True AMCG00018066
AMCG00018079 mRNA upstream 45062 971766 ~ 978842 (-) True AMCG00018079
AMCG00018082 mRNA upstream 74972 1001676 ~ 1012365 (-) True AMCG00018082
AMCG00018083 mRNA upstream 240961 1167665 ~ 1184993 (-) True AMCG00018083
AMCG00018085 mRNA upstream 274035 1200739 ~ 1203173 (-) True AMCG00018085
AMCG00018086 mRNA upstream 280819 1207523 ~ 1208541 (-) True AMCG00018086
TU142760 other downstream 479854 441085 ~ 442424 (-) True G114021
TU143224 other upstream 1058445 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1080202 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1354996 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 1682441 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 3134107 4060811 ~ 4064248 (-) False G114838

Expression Profile