RNA id: TU142989


Basic Information

Item Value
RNA id TU142989
length 564
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00018077
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 922278 ~ 926739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaaaatacGCAGGAGCCGCACAGAAACGCACAGCGCGCCTCTCTCTTGCCAGGACTCGACGATGCAGAAGAGAGACATTCAGTCGGAGCTGCAGAGCCAGTTCAACGATGTTGTCAGCCGGCTGCAGTCCAAACAGATGTTCCAGTCGGACTGGGACATTGCTTCCTTCGCCATTTTCTTCATCTTTATCGGCACCGTTCTGCTGCTGGTCGTACTGGTTCTGatccgctgctgctgctgctgctgctgcgacACTGCCGACAAGCCTCGCCGGACCAAAGTCGGGGTGGACAACTATGCGCTGGAACCATAAGACACGGGTCTGGAGACAGAGATGGGAGTCGGAGGGAAAAGCATGATTCCACTCTCCTCACCTGTGCAAAcctgtacaaaaataataatgatgccaGACACCGTGCCAAGCTAATCAACCTTGTGATCTGTCAGGAAAATTATCACCACAGTGCCTAATCTGCAAAAGACAATAAGGAATGAAAGTCTTTAGGACCAActttatgattatttatatacacagataTGTGTATATCttaattggaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142981 lncRNA downstream 9866 913231 ~ 913641 (-) True G114183
TU142977 lncRNA downstream 19664 902320 ~ 903843 (-) True G114179
TU142957 lncRNA downstream 34419 879311 ~ 889088 (-) True G114166
TU142932 lncRNA downstream 123036 796993 ~ 800471 (-) False AMCG00018074
TU142784 lncRNA downstream 423989 498327 ~ 499518 (-) True G114044
TU143020 lncRNA upstream 236151 1162890 ~ 1166493 (-) True G114213
TU143085 lncRNA upstream 341554 1268293 ~ 1268816 (-) True G114264
TU143095 lncRNA upstream 586254 1512993 ~ 1513642 (-) True G114273
TU143110 lncRNA upstream 606717 1533456 ~ 1534985 (-) True G114286
TU143139 lncRNA upstream 825157 1751896 ~ 1846771 (-) True G114304
AMCG00018080 mRNA downstream 4123 915840 ~ 919384 (-) True AMCG00018080
AMCG00018078 mRNA downstream 21839 890097 ~ 901668 (-) True AMCG00018078
AMCG00018073 mRNA downstream 82585 802720 ~ 840922 (-) True AMCG00018073
AMCG00018074 mRNA downstream 123135 777387 ~ 800372 (-) True AMCG00018074
AMCG00018066 mRNA downstream 255596 662249 ~ 667911 (-) True AMCG00018066
AMCG00018079 mRNA upstream 45027 971766 ~ 978842 (-) True AMCG00018079
AMCG00018082 mRNA upstream 74937 1001676 ~ 1012365 (-) True AMCG00018082
AMCG00018083 mRNA upstream 240926 1167665 ~ 1184993 (-) True AMCG00018083
AMCG00018085 mRNA upstream 274000 1200739 ~ 1203173 (-) True AMCG00018085
AMCG00018086 mRNA upstream 280784 1207523 ~ 1208541 (-) True AMCG00018086
TU142760 other downstream 481083 441085 ~ 442424 (-) True G114021
TU143224 other upstream 1058410 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1080167 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1354961 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 1682406 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 3134072 4060811 ~ 4064248 (-) False G114838

Expression Profile