RNA id: AMCG00018078


Basic Information

Item Value
RNA id AMCG00018078
length 6169
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00018078
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 890097 ~ 901668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGGCGCACGTTGATGACGTAGCGGCCGGCGCTCGGCGAGGTCCTATATAAAGTCCAGAGATAAACAAGAGAGAAACCGAGGGGGTTAAAATAGACTTGATATTGGGGGGGTACAAATTAGCGACTTTGCTCATGTTGTGTATTATGTGTGTGGTTTGAAATAAGTGACGTTTTAATGACAGGCCGTAGTGTAAAAAGTAGCGAGCTCGGCTTGTGATGAGCGCTGATATTGTGTGACGTGCAAAGTACTCCAAACGTTGCTCTTGCTTTTCccatttttctgttgttttgcacGGCGAAGCATCCACGACATTGGGCCTTTCTTCCTCTGAAGGGGTGCTGATGCCTTTGTGCGCGGCCGGGTAGTTAGATCTGCCCGGTGTGCGCGTCATGTGCATGATTTCACTGTCCTAAACGATCATGGCTGGGGTATGAAGAAAAATAGGTCAAACATGTCGTGTGCCATTGATAGATGATTGCTCAGGCAGGACTCGGAGCTGGTACTAGTGTAGCGACAGGACACGGGCGgggcggtgcggtgcggtgcggggCAGGACATGTGCGTTCCCGGGCGCTAATCGATAACCGGTTTGGACCGCGGAGGTGATCACGTCACAATGATCCCCGGCATGTAAAGCAGCGCGAGGAGAGACGCGGGACCCAACACGTGCTGCGGGAGTGACTGCGGTGCACAGCCGGGAGCGACCCATGGCCGAGCCCAGGAGGGTGCAGCTCACCACCCTGCCCAGCAATGTCCCACTTCCGTCAACTGTCCTCAAGATTCCGCCCCGAGAGGAGACCCCCGCGGCCGCCAGCCCCGGGGACAGCGAGCCCAGGGCCGAGAGCACCGCCCGGCTGGTGCTGGCGCTGTTCGAGCCGGACCAGCGGCGCTGCCCCGAGTTCTACTACCCCGAGTTAGTGAGGAGGAAGAACAATGCTGTTAAACAACCAGCTAAATCTctggaggagcagcagcaggaggaggaaaagaaggAGAAGACAAGACAGGAGGTGGAAGCTCTTGCCAAGAAGTTTGAGGAAAAATACgGCGCAAAGAAGCGTAAGAAGGACCGTATGCAGGATTTGATTGATATGGGATACGGATATGATGAGACGGACCCCTTTATTGACAACTCGGAGGCTTATGACGAGCTGGTGCCGGCTTCGCTCACCACCAAGTACGGAGGCTTTTACATCAATTCAGGGACGCTGCAGTTCAGACAGGCCTCGGAGTCGGAGCCGGACGATGACTTCGGTcaagagaagaagaagattaAAACCCCCAAGAAGCGAAAGTTAAAGGACGGAAGTGAAAAGctcattaaaaagaagaagaaagaagaggGTCAGCATAAAAAATCCAAGGTTTCGAAGGCGGGTATTATGCCACTCAACGCCAAcgaggagaaaaagaagaaaaagaaacacagcagcGTCCTGACAGTCCAAGAGATGCTGAAGAAGTTCCAGAGGGAGAAGGAATCccaggagaaggaggagcccAAGCCGGTGCCCAACAGCCAGCCGGTGTCGGTGGTGACGGTGCCATCCGTCCGGGAGTCCGACGGCGGCCTGAACGCCTCGGACCCCCTGCTGTCGCTCATCGGCTCGGCCAACGAGAGCGACCTGTTCCAGGCGGCCATCGACATCGGCGACATCGACCTGGACAAGCTGCTGTACGACTCCCCCGTCACCAGCCCCCTGGGCCTGGACGAGAACAGTGACCCTCTGGGGGCCGGGGGGGGGCAGGTCCAGAAGCAGACCCCTACCCTGCCTGAAGGCCTGCCTGCCCCCCTGGAGAGGAGGATCAAGGAGCTGACACAGGCTGCCAGGGCATCAGAGGGCGAGGGGAAGCAGAAGTTCTTCACCCAAGACATCAACAATATGTTGCTTGACATCGAGCTGCAGACCCGGGAGCTCAACAGCCAGGGCCGCTCGGGCGTCTACGCACACCTGGCCTCCTTCCTGCCCTGCAGTAAAGACACGCTCGTCAAGAGAGCCAAGAAGCTGCACCTGCACGAACAGgaCGGCCGTCTCAAAGAGCCACTTCAAAGGCTGAAGGAAGCCATCGGCAGGGCGATGCCCGGGCAGGTGACCAAGTACCAGGACGACTGCCAGGCGCACACCCAGGCCAAGTTCGCCAAGATGCTGGAAGAGGGGAAGGAGaaagaacaaaaggaaaaagcCTGTTCTgaggaggaggacgacgagGAGAAGAGTGGGAAGCGAGTCATGGGCCCCCGGAAGAAGTTTCAGTGGAACGAGGAAATCAGGGATTTTCTGTGCAATGTGGTGCGAATAAAGATGGGCAGCTACGAACTGGAGCGGAACAAGTCGCAGACGGCGGAGGAGTACCTCAAGGCCTTCCTCGAAGCCGAGGTGAAGCCTCTGTGGCCTAAGGGATGGATGCAAGCCAGGATGCTGTTCAAGGAGAGCCGAAGGGTTCACAGCCACCTGACCTCTGTACCGACAAAGAAGAAAGTCATCGCTGCTCCCAGAATTAAGATGAAGGAACCCTTCGTGAAACTTGAACGAAAGATCATCACCTCTCTGGGCGGGACTCTCATGCAATCGGGCAGCGCCGGGGTTCTGGTCCACGGCCCGGCCGGCGCCCCCCTGACCTCCGTTGCCCCGTTCGTGCCCATGGCAGCGGCGGCCCTGCAGGGTCTCAGCGGCGCGGCCCACCCACAGTCCTATGGCCTGGATGACTCTCTCGACGAGGACCTGATCCACAACCCCCCCTCGCTGGAGGCCGTGTCTGAGGAGCTGGCCGCCCTGAACAGCGCCGCCAGGGGCAGCCCCGACTTCTTCGGCCCGGTCCACAATGCCACTGACGCCATGCCCGTGCTGACTTCCGCCGAAGAGACCAAGCCGTGCGGCTCCTCGTCCGCCGCCCCCTCCCAGTCGCCCCTCAACCTCCTGGCCGAGCAGGCACTGGCTCTGGGACAGCTCTCCCAGGACCGCAAACAGGACACGCCGCAGCCTCTCTCCGTGCCCGTCTACAAGGGCCTCCTGTCGCAGACCCCCGCCTGCAGCAAGGCCCCACCGGACGCCGCGCTGGCCAAGCAGAAGGCCCTCGGGGTGCTGCGCTCCGGCCCGCCGCAGCCCTCCGCCAATCCCCCGCCACCCCAGACCCTCAAGCCCTTTCACCAGACCGGTCCACTGCAGAAGGGCTTCCCCTCCGCGGTGCAGTTCAGCGTGGGCAAGCTGCCGGGCACCACCCTCAATAAATCGGCAAAGTACTTCCAGCAGTGCGCTGGTATGCAGCTGTCCAAAGCGGTCGCCAAGCCCCCCGCCTTCCACTCGCTCCCCTCCACCCTGCCCAGCAGCGTCCCGGCCTCCCCCATCGCCGTGCCCAAGGGCCTCTCCTCGCCGGCCGCCACCGTGGCCTACTTGTCCAAACACAGCCCCTCCTCCGGCGCCGTGGCCCAGCAGTTCAAGAGCACGTTCTCGCTGGCGACCATGGGGAAGGTGGCCGTGTCCTCTTCAGCCCAGGCCGCGTCTGGCTCCCCGGCTGGTGCCAGCTCCTGTGGCATGATGGCATCTCACAAGGCCTCCTCTCCTGGGCAGGGCTCCGGTCTGCCATCCCCCGGCGCCGCCGCCAAGAAAGCCTTGTCTTCTCAGAAGCTCACCCTGGTGGCGCCCCCCGGCGGCTCGAACGGCGACTCCACGATGGGCATGCAGGGCGTGGCCCGACTCCTGACCTCCTCACTCAAGCCGGCGCCGGCGCCTGCGGCCTCACCGACCAAGATCACCACGGGAGCGTCTGTCCTGTCGAGTTCCCCATCCCTAAACCTCCTCTCGCCGTCGTTCACCACCTCGGGGCAGAAGCTGGCGCCGGGCACGCTGGGGGTCCTGCCGGGCATCGTGCCCCTGCACACCTTCAGCTTCCCTGTCATCACCTTCGGTGCCGACTCTGGAGCCAAGATGGGGGGCACGAAGGACGCCATTGTGACCGGCCCAGCGCCGGGCACCTTCCACCACGGCCTGGCGCACAATGGCAGTCAAATCCATGGAGAGAGCCCCAGCTCCCAGAGGAAACTGCCATGATGAGCTCTAATGGACGGCAGCGCAAAGGAACTGCGactgtttattttcccttcagtctttctttttctattgAAATACGTGTTCTTGTTCACCAGACTGACTGTGAAGTTTCTGAACGGAGCTGACTGGATGTTCTTAAGGAAGTGACTGAAACGGGTCGGATGGCCGTCAAAGCGCAGAATCGCGCCGCgaggtttattttgtgtgctttctatttttgtttagggtttttttgGCAAGGGGGtgggtgtgttttttgttttctctgcttgGTGTGACACGGATGAAATGCAAGAGAAGAAAGTTGATCCTTAGCTAGTAGGTGGCCAGATTGAAAGAGTGAGATATGGGTTTCTGTGCTTCTGAAGGCACCGCATCTGAAAACTCAACGCACCGGTGAATGTTCAAGCCTTCAATCAGCAGGCCGTGTTCAAAGATCTAGTTCATCGAATGTCTTGCACGGCGTTTGGCTTTCTGCTGAAAGTGTCGCGTTTGATCGCGGTGTCTCGTGATGAAGGGCGATTTCGGTGGAGACTCGGAAGTTCAGAGTTCAGATGCCAGGGTCCGTCCCGTTGAAGACAGGTCAGCTTCTTCCCAAAGTCCTGGTCTCGACCACGGGAGCCGGGAGCGGAGGATCACAGCGACCCACTGGTCAGCAAATGAAAAGCCTTCAGTTTGAGGTGTATTAAATGTATCCAGTGGTTTGTGAACTagctcttatttttttgttcagtgtcTCCCTCATCATGTGTAATATTTCCCCTGGCAAAAAATAGCACTTATtgagaaatataatttgatgtatttgtcCTGTAGACGAAAATGTATCGAGCTAAATTAGATTCCCCGTGTGGATCAGAATTGCTCTGTAGCCTCTACAGGTTAGGACAGTGAAATTGGAAAGTTGTCAGTTTTTCTAGTGCCAGATTTTACACGATTACTGCGGTTACTGCAGTTACTGCTGCTAACGTCTGGCAGTGTAAACCATGGTTTCCTTGTCTCTGTTCAGGCCTGTTTCGCAGGATGATCTTCTACAGTAGCGTCTGTTCATGAAAACTGCTTGATAAAAACCAATAAGAATTAGTCcttaaagattttattttgtgtaaactTCTGTAGAAGCCGTGGGACCACAATCATTGCCAATTGTTATTGTActttaagtatttttgtttgtcagGCTTTTGATTTGCATTGAAGAATGTATACAGAAACCGTTGcattaaaattaagatttgGTGATTTTGAACTCCACACAAAGCACTTTCCATCTCAGTGCTGTTGCCACCCGATCataaattgcattttacagtatataattgTTGGTTATATGGTATTTATTGTGGTTGTTGAATATATATGAATCCATAAGCTATTCTTTAGTTTCGCCAAAGGGACAGACTTACCGAtcgccattaaaaaaaaaaaaacgttgaCCTTCattaaaagctgtttttgaGGGGTTATTTCTCATCCAGTCTTTTTGCTAATATGCTATTGTCATTTGCACAATGGTGGTTTCTGCCGTTAGAGGAATTGTGTTTTCTAAACCCAGTTCTCCGTTCTATGTATTCAACATTGGTGGGATGTAAGAGAGACCAAATATGTCACAAAGTATATCAGGCCCGTTTGGATCTTCATTCTAGAACTTTTTTGTTAAGTTTGCGTTGATTTAGAATGAAGTTTAAAGCCGCAGATCTGACTGATCGCACGTTAAAGGGCCGAGATCGGACGGGGTTGTGAATCGCAGGGCGGCGCGGTTCACGTGGAGCCGCCGCAGCAACCATAGTGTTAATGGTGAGGTACAAGCTCAGGACCTAATCAATTATTGATCATTTTGAGCCATTTACTTGAAAATTTAAAGCTATATTTGTACATATGATTATGACGTGATGCGCTGTAGACTGTCAATGTAAAATAGCActtaacttttaaaatgcttcattgTACCTGTACCGTTTATAGCTGGGGGGCGAGGGACAGGTTGCCAGGGGTATGAAAGCTGTTTTGTTAATCTTGTATAAactgtttcatgttttgtatttccaaaaatgtatttaattgagaAGATGCACGGAATTGACtctaataaagttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K17492 UBN; ubinuclein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142957 lncRNA downstream 1009 879311 ~ 889088 (-) True G114166
TU142932 lncRNA downstream 89626 796993 ~ 800471 (-) False AMCG00018074
TU142784 lncRNA downstream 390579 498327 ~ 499518 (-) True G114044
TU142769 lncRNA downstream 417973 468917 ~ 472124 (-) True G114030
TU142977 lncRNA upstream 652 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 11563 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 261222 1162890 ~ 1166493 (-) True G114213
TU143085 lncRNA upstream 366625 1268293 ~ 1268816 (-) True G114264
TU143095 lncRNA upstream 611325 1512993 ~ 1513642 (-) True G114273
AMCG00018073 mRNA downstream 49175 802720 ~ 840922 (-) True AMCG00018073
AMCG00018074 mRNA downstream 89725 777387 ~ 800372 (-) True AMCG00018074
AMCG00018066 mRNA downstream 222186 662249 ~ 667911 (-) True AMCG00018066
AMCG00018064 mRNA downstream 231589 651287 ~ 658508 (-) True AMCG00018064
AMCG00018067 mRNA downstream 267852 617211 ~ 622245 (-) True AMCG00018067
AMCG00018080 mRNA upstream 14172 915840 ~ 919384 (-) True AMCG00018080
AMCG00018077 mRNA upstream 20610 922278 ~ 926704 (-) True AMCG00018077
AMCG00018079 mRNA upstream 70098 971766 ~ 978842 (-) True AMCG00018079
AMCG00018082 mRNA upstream 100008 1001676 ~ 1012365 (-) True AMCG00018082
AMCG00018083 mRNA upstream 265997 1167665 ~ 1184993 (-) True AMCG00018083
TU142760 other downstream 447673 441085 ~ 442424 (-) True G114021
TU142989 other upstream 21839 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 21839 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1083481 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1105238 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1380032 2281700 ~ 2288862 (-) True G114430

Expression Profile