RNA id: AMCG00018082


Basic Information

Item Value
RNA id AMCG00018082
length 1640
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00018082
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1001676 ~ 1012365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTTCctattgttaattgttttgatgcTGTTAATATATCTCGCCAATCTCTAGCtgatatatatatcatcagccTACATCAgtctactgctggatgaaggctcttGATCTTTAGCTTCTCTTTCCACAGCACACctgcaatgttttttattgcatcTTCCTACCTTTTATGTGGTTGACTTAAACTCTTGGGACgtatgatgtcacatattttatttgttcgcagaaccaatatgtttttgtttcatctaGCTCATGTCTATGAGCCATGCCATGTGCATTATATtgatgcatgtatgtatttttaaaaacgtGTTGTGCCACTACAGTGTTGCACATCGTCCAGTATATttaacaaatgttaaaacagcTGTGGCCATCGAGTGACGCAATGCCCGTGATGACATGGCGTTTCTGCGTCGCTGAGTCACGACCTCCCTCTGTGGAGAATTCTGGAACTCTCCGGGAGCTGCGCCATGACGTCACCTCCGTCATCAGGGTGCGCCGCGACGCCGGGAGGAAGTGGGAGGAGCCAGAGGCGAGCACATAAGAGCGCGTCGCGCAGGAGGCGTCATGATCGCTGGCGGACGGGCTGTTGTTATTGTGCTGACAGCCGCGGCCGCGGAACAACACCACCGTCCCACACCACCGTCCTCCGCACCGGGAGCCGGGAGAACAAGCTCCGCGTCGTCCAGAAGCCCCTTTCCGgcccagctgacctccgCTCGTCTCTGCGGCGCCATGGAGTTCCCGGACCTGGGCGCGCATTGCTCCGAGAGGACCTGCAAGCGCCTGGATTTCCTTCCCATGAAGTGCGATGCCTGCCAGGATATCTTCTGTAAGGACCACATCACTTATGTAAACCACAGGTGCACTTCAGCGTACAAAAAGGATGTCCAGGTCCCGGTCTGCCCCCTGTGCAACACCCCGATCCCAGTGAAGAGAGGAGAGATGCCGGATATTAAAGTGGGGGAGCACATCGACCGAGACTGTAAATCAGACCCAGctcagaggaagaggaagatttttacaAACAAGTGCTCGAAGGGAGGCTGCAAACAGAAAGAGATGATCAAGGTCACGTGTGACCAGTGCCACCTGAACTACTGTCTCAAGCACAGACACCCTCTGGACCACGAGTGCAAGACTGAGGGCGGCCCCCTCTCCAAGGCTGGACACGCTGCCCTGATGAGAACCCGTGGGAGCGGCTCCAGCTCTGGTTCCAGCTCCTCGGGTGCCAAAGGCGCATCCAGGTCCGTCCCCAATGGGCTGAGCGGCACGAGAGCCCAGCAGAGCAGCTCTACCCGCAGCGCAGCCGCCGCGGCCCCCGCACCCCCTCCAGCCCCCCGGCCGGTCCCACAGGCGGCGTCTCTGCAGGCGGGTCTGAGCGAGGAGCAGGCCCTGCAGAGAGCCCTGGAGATGTCCCTGGCCGAGTCGGCGAGAAGCACACAGGAAGCGCTGAGTCCGCAGGAGCAGGAGGACCTGGCCTTGGCTCAGGCTCTGGCCGCCAGTGAGGAGGAGTTCCAGCGTCAGCAGCAGCTCAGACAGGCACAGGGGACGACGGCTCTGCTAGCGGGCTTTGACAATCACGCTGTGCGGATCAGGAAGGCACCGGGGTCCGAGTTCACCATGGTCTGA

Function

GO: NA

KEGG:

id description
K24685 ZFAND2; AN1-type zinc finger protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142981 lncRNA downstream 88035 913231 ~ 913641 (-) True G114183
TU142977 lncRNA downstream 97833 902320 ~ 903843 (-) True G114179
TU142957 lncRNA downstream 112588 879311 ~ 889088 (-) True G114166
TU142932 lncRNA downstream 201205 796993 ~ 800471 (-) False AMCG00018074
TU142784 lncRNA downstream 502158 498327 ~ 499518 (-) True G114044
TU143020 lncRNA upstream 150525 1162890 ~ 1166493 (-) True G114213
TU143085 lncRNA upstream 255928 1268293 ~ 1268816 (-) True G114264
TU143095 lncRNA upstream 500628 1512993 ~ 1513642 (-) True G114273
TU143110 lncRNA upstream 521091 1533456 ~ 1534985 (-) True G114286
TU143139 lncRNA upstream 739531 1751896 ~ 1846771 (-) True G114304
AMCG00018079 mRNA downstream 22834 971766 ~ 978842 (-) True AMCG00018079
AMCG00018077 mRNA downstream 74972 922278 ~ 926704 (-) True AMCG00018077
AMCG00018080 mRNA downstream 82292 915840 ~ 919384 (-) True AMCG00018080
AMCG00018078 mRNA downstream 100008 890097 ~ 901668 (-) True AMCG00018078
AMCG00018073 mRNA downstream 160754 802720 ~ 840922 (-) True AMCG00018073
AMCG00018083 mRNA upstream 155300 1167665 ~ 1184993 (-) True AMCG00018083
AMCG00018085 mRNA upstream 188374 1200739 ~ 1203173 (-) True AMCG00018085
AMCG00018086 mRNA upstream 195158 1207523 ~ 1208541 (-) True AMCG00018086
AMCG00018087 mRNA upstream 204928 1217293 ~ 1237035 (-) True AMCG00018087
AMCG00018088 mRNA upstream 224885 1237250 ~ 1248772 (-) True AMCG00018088
TU142989 other downstream 74937 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 74937 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 559252 441085 ~ 442424 (-) True G114021
TU143224 other upstream 972784 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 994541 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1269335 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 1596780 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 3048446 4060811 ~ 4064248 (-) False G114838

Expression Profile