RNA id: AMCG00018084


Basic Information

Item Value
RNA id AMCG00018084
length 2879
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00018084
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1262029 ~ 1265534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGgccgtgtctctgtgtctccgcGTCTCCGGGACGAGGGAACGTGGAGAACTCGTCTCTGTGAGAAGAGGCCGCCGGTGTTTACAGCTCTGCCGCACGCGGCTCCGCGCTCAGGCGGCCGGGACAGACCCCAGCTGGACCCCCGCGGTGACCGACCCCTCACTTGGCGGCAGCAGGTCTCTCTGTTGGAGCGCTGTGGCGAAGCGCAGATGAGCTCAGAGGGGCAGGCTGCCTCTGCCATGCGATTTCACGGTCTCTCGCTGACCTCTGCTGGTGGTTCATGctgctTTTCCGTGGAGTTCCAGCCCGTTGGATGCATACGGGGCATGACGACTAATTTTAAAGCCAGCAAAGCTTTAAAGGTAAAGAAGGAGGCCGGTGAGAACGCCCCCGCGCTCAGCGATGACGACCTGGTGTCCATGTCGGTGCGCGAGCTCAACCAGCACCTGCGCGGGCTGACCAAGGAGGACGTGGTGCGGCTGAAGCAGCGGCGGCGCACGCTCAAGAACCGGGGCTACGCCGCCAGCTGCCGCATCAAGCGCGTCACGCAGCGGGAGGAGCTGGAGCGGCAGAAGAGCGAGCTGCAGCAGGAGGTGGACAAGCTGGCGCGGGAGAATGCCAGCATGCGACTGGAGCTGGACGCGCTGCGCTCCAAGTACGAGGCGCTGCAGAGCTTCGCCCGGACCGTGACCCGCGGCCCGCTGGGCCCCTCCAAGGTGGCCGCCACCAGTGTCATCACCATCGTCAAGTCGGCGAACCACAGCGCCGGCGCCACGCCCTTCTCCACCCTGTCCTAGTGTCGATGGAATTAGGCTCGCCGTGGCCCGGGCCCGGGAGTCTCCGCTCTCCCCCGCTTGCCTGCCTGCGCCGAAGCGAGGCTAATTCTGTCAGCGCCCCGTCCAGCCCCTCTGTGCGTCTGTGCTATGACCCCCCAGCACCAGCAGGGCGATCACCTCCCCGTCGAGGACGCGCACTAAAACCCCCCCACACACGGCCTGGTCCCGGCCAGCGGTGTCCGGCGTTCGCACCCCTGACTTATCTTCAAGCAACTTCAATAAAACCACGACGGCACTGCGGCGATCAGACGCACTGCATGTCTGCCCTGAGGACGGAGATGCGGTTGTGCTTCGATCACCTGCAGTGAAGGTATCGGTCAGCAGTCAGACCGGCCtgaacacatttgtaatttcaatttaattactCTTCTAAAGACATTGGTCTCCGAATCGCTCCTGATCGCTGACCAGACGGCAGAGTGTGACATAAAGTGACAGAGTGGGTTATAAAGAGGCTTCAAGTTTACAGAGCCTTTGACAACCAAGTAAGTTAggggaaattaattttatttcacattataaatacattaaacacattttgtttcagttactCTGACAACTGGTTGCTGCTGGATAAATATCAGATGTTACTCCCGAAGAGGCACTTACTAGCTTACTGTTAAAACAGGACAGAAACAGCACTTGCgcaaaacttatttttatatatatatgtatatgttgtaaAGAAGCTACACGGAGGGGCCCTTCGCACCTCCGCGCTCGAAACGACACCCGTTAGTGTTCTGACATTCGAATCGAATTAAGGTCGGAAATCGAAGCGCTGTGCTTTATCGGAACGTGATGAACGCACGGTTTCGTACGATCGTGATAGtttcatggtttgtttttcttctctgaaCACTCTGCTATCAATGCCATAGTTCATGGTGGGTAATCCATATTGGATATAGAGCTGAGGGGAGACGCCTTGACAGATGCACAGACAGcaacacaaactaaaataaataacacccaATATTACCTGTATATTACAGATCAATGACACTTCCTTTGATTCATTTTTAAGAGGAAAACTCAAACCTGACACCTCTTTCCTGAAGTTTTGTCCCCCGGACGGCATGCCTCCACTCTGGTCTCCTTCGCTACACTGCCGGTGTTTCATATGATGTCATTCGTTTTGGTCGTACTGTAATATTTCGATGCGCACACGAGGGTGAAGAGAGTCCTGAAGGTGGACTCCGGTCTCCAGAAGCATTTTAAGGAGAAACCACCTCTGTGAATACTAGATTTGAGATGAAgccataaagaaaaacaatgatcGTCATTATAAAAATAGTAATCGTAGTTGTCGATCTTTTCTTCAAATATTCCAGGCAAATATCCTCAAAACGTCAAGAAAATTGTTTGTAAACTTAATCAAATCAGTTTTACACAAGTTCCCACAGACACCAGTCAAACCGTAGCCACCAAACCCCATTACAGGCCCCTGAAAGGGCAAACGAACCAGAAACCAAAACGACGCCAGACATGACGCAAAAAGATCCGTTCTGAAGGCAACTTAAAACGGATTCCCAGCTTGGGGGTCTCTCTCGCCCGGTGGAAAACGATGGCGCTTCCTCGTCTCCAGACAGGGTTACGAGAGTTTGCCGCTCGATGGCCGATGGCAGACCCAGGCCGTTGCTGTGCTCTTATCGTTATCATTTCGCATTTCCCGATTCATTTCCAcatgtgctgttgtgtttttcgGAGTGTGTTTCTACTCTCGGGCAGGGAGGATCTTGTGACGGACCCCCCAGGTCAGGACAGCCATTCTTATCTGACAGAGAAGGCCTCTCGTGGGTCGTGATTGTGATGCCTGTGTTTGGGAGACGTGGTTGTGTTAACGCCACTTCTGCTGAGGGGTTAATGCCAGACGAAGCACTCGTCTAGTTTCGATACAGATCTTCATATTCCTGGAAGCTGATCGCACGTTGCATCAGAGTTCGTCCTCCTCGGTCTGTCCTCAGACTTCATGAGTGTTTACACACGGACAGACTGATGCACTTCTATACCTGCATTAATACACACACCTgtacgga

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09037 MAFF_G_K; transcription factor MAFF/G/K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143011 lncRNA upstream 83934 1162892 ~ 1178095 (+) True G114205
TU142803 lncRNA upstream 708525 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 789905 468788 ~ 472124 (+) True G114018
TU143047 lncRNA downstream 1306 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 25021 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 267941 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 599023 1864557 ~ 1865570 (+) True G114299
TU143159 lncRNA downstream 684727 1950261 ~ 1950500 (+) True G114321
AMCG00018081 mRNA upstream 220498 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018076 mRNA upstream 340915 919090 ~ 921114 (+) True AMCG00018076
AMCG00018075 mRNA upstream 349253 902184 ~ 912776 (+) True AMCG00018075
AMCG00018072 mRNA upstream 372996 871321 ~ 889033 (+) True AMCG00018072
AMCG00018069 mRNA upstream 484739 763554 ~ 777290 (+) True AMCG00018069
AMCG00018091 mRNA downstream 243460 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018097 mRNA downstream 483695 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018096 mRNA downstream 504622 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018104 mRNA downstream 530868 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018102 mRNA downstream 545901 1811435 ~ 1846910 (+) True AMCG00018102
TU143029 other upstream 41813 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 383050 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 467239 777383 ~ 794790 (+) True G114123
TU142799 other upstream 682325 575260 ~ 579704 (+) True G114053
TU143157 other downstream 682307 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 707392 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 711470 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 713512 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 713512 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051984 True 536 mRNA 0.58 2 NC_007114.7 42964716 ~ 42967698 (-)
grasscarp (Ctenopharyngodon idella) TU222729 True 156 lncRNA 0.38 1 CI01000046 2439917 ~ 2440072 (+)