RNA id: AMCG00018091


Basic Information

Item Value
RNA id AMCG00018091
length 2379
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00018091
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1508994 ~ 1511372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCACCATGGAGGCATGGCGATGACGGCCTTCTGCTGGGGGGTGGCACTGCTCTCCTTCATGCAGGCATCGGGGGTCCGGGGGGACTGCTGGCTGATCGAGGGGGAGAAGGGCTTCGTGTGGCTGGCGATCTGCAGCCAGAATCAGCCGCCGTATGAGGCCATCCCCCAGCACATCAACAGCACCATCGTGGACCTTCGGCTGAATGAGAACAAGATCAAAAGCATCCACTACTCCTCGCTCAGCCGCTTCGGGAACCTGACCTACCTGAACCTGACCAAGAACGAGATCAACTACATTGAAGACGGCGCGTTCTCGGCCCAGTTCAACCTGCAGGTCCTCCAGCTGGGCTTCAACAAGCTACGCAACCTGACCGAGGGCATCCTCCGGGGCCTGGGCAAGCTGCAGTACCTCTACCTCCAGGCCAACCTGATCGAGACGGTGACACCGAACGCCTTCTGGGAGTGCCCCAACATCGAGAACATCGACCTGTCCATGAACCGTGTCCAGGTGCTCGACGGCATGACCTTCACGAGCCTCAGCAAGCTGACCACCTGTGAGCTCTACACCAACCCCTTCCGCTGCTCCTGCGAGCTGCTGGGCTTCCTCAAGTGGCTCGCCAGCTTCCCCAATCGGACCAACGAGCGCATGCTGTGCGACTCTCCACAGGAGTACTCGGGCTTCAGCCTGCTGAGCCAGAACCCCAACCAGCCGGCGTACCGCAACGCCCTGCACAGCCTCTCCAGCATCTGCTCTGACGACTATGAGCAGCCCATCTACACAGTGCCCCGGTACACCTCCACGACCATGCCGCCCACAGACATCCCCTGCATGATGGAGGACTGCGGCTCTGGGACAGACCCGGTCGAGGTGATCAGCTTTAGCCCACCCTACCTGGACCCCGGGATGAACCCCATCATGAAGCTGAAGCACGTCACCCACACCACGGCCACCATCACGGTGCAGATACCGCACCCCTTCCGGAAGATGTACATCCTCGTGCTCTACAACAACAGCTTcttcacagacatccgcaaCCTGCGCAGCCAGAAGGAGGACATCGAGCTGACGGGCCTGAAGGCGCACACAGACTATACCTACTGTGTGGCCTCCATCCGCAACAGCCTGCGCTTCAACCACACATGTCTGACCATCTCCACAGGGCCGCGGAACGGCAAGGAGCACGAGGTCAACTCCTCCACGGCCACCCACTACATCATGACCATCCTGGGCTGCCTCTTCGGGATGGTCATCGTCCTGGGCGTGGTGTACTACTGCCTGCGCAAGAAGCGACAGCAGGATGAGAAGCACAAGAAGGCGGGCAGCATCAAGAAGAACATCATCGAGCTGAAGTACGGCGCCGAGCTGGAGAGTGGGACCATCTCCCAGCTGACCCAGAAGCAGATGATGGCTGCTGAGAATATGCCCCGCATGCCTTACTTGCCCTCCAGCGGAGAAATGGAGCAGTATAAACTACAGGACATCAGCGAGACCCCGAAGACGGCCAAGGGCAACTATATTGAGGTGCGGACCGGCGAGCAGTCCGACCGAAGGGAGTGCGACATGTCGATGCCCGGGAACAACCAGGGCTCTGTGGCGGAGATCTCCACCATCGCCAAGGAGGTGGACAAGGTCAACCAGATCATCAACAACTGCATCGACGCACTCAAGTCAGAGTCCACGTCCTTCCAGGGAGTGAAGTCGGGCGCTGTGTCGACCGCGGAGCCGCAGCTGATGCTGATCTCAGAGCAGCCGCAGGGCAAGGCGGGCTTCCTGTCCCCGGTGTACAAGGACAGTTACCACCACCCCCTGCAGAGGCACCACAGCATGGAGGTGCCACCCAAACGCTCGAGCACATCTTCCAGCGGCTCTGTCCGCAGCCCCCGCTCCTTCCGCTCGGAGGGGGCCTACAAGTCAGAGGCGAAGTACATCGAGAAGACATCGCCTACGGCCGACACCATCCTGACGGTCACGCCCGCTGCCGCCATCCTGAGGGCCGAGGCGGAGAAGATCCGGCAGTACAGCGAGCATCGGCACTCATACCCGGGCTCCCACCAGGGGGACCAGATTGAGGGGCCGGGCAGCCGCAAGCCGTCCATCCTAGAGCCCCTGACCCGGCCCCGGCCCAGAGACCTGACCTACTCCCAGCTCTCGCCCCAGTACCACAacctcagctactcgtccagtcccGAGTACTCGTGCAAACCGGCACACAGCATCTGGGAGCGCTTCAAGCTGCACCGCAAGCGCCACAAAGAGGAGGAGTACATGGCGGCGGGCCACGCGCTGCGCAAGAAGGTCCAGTTCGCCAAGGACGAGGACTTGCATGACATCTTAGACTACTGGAAAGGTGTGTCGGCCCAGCACAAATCTTGA

Function

GO: NA

KEGG:

id description
K17567 ELFN1; protein phosphatase 1 regulatory subunit 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143063 lncRNA upstream 217143 1290555 ~ 1291851 (+) True G114253
TU143047 lncRNA upstream 240101 1266840 ~ 1268893 (+) True G114237
TU143011 lncRNA upstream 330899 1162892 ~ 1178095 (+) True G114205
TU142803 lncRNA upstream 955490 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 1036870 468788 ~ 472124 (+) True G114018
TU143096 lncRNA downstream 22103 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 353185 1864557 ~ 1865570 (+) True G114299
TU143159 lncRNA downstream 438889 1950261 ~ 1950500 (+) True G114321
TU143160 lncRNA downstream 439843 1951215 ~ 1951599 (+) True G114322
TU143161 lncRNA downstream 441502 1952874 ~ 1953264 (+) True G114323
AMCG00018084 mRNA upstream 243460 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018081 mRNA upstream 467463 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018076 mRNA upstream 587880 919090 ~ 921114 (+) True AMCG00018076
AMCG00018075 mRNA upstream 596218 902184 ~ 912776 (+) True AMCG00018075
AMCG00018072 mRNA upstream 619961 871321 ~ 889033 (+) True AMCG00018072
AMCG00018097 mRNA downstream 237857 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018096 mRNA downstream 258784 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018104 mRNA downstream 285030 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018102 mRNA downstream 300063 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018105 mRNA downstream 461466 1972838 ~ 1973924 (+) True AMCG00018105
TU143029 other upstream 288778 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 630015 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 714204 777383 ~ 794790 (+) True G114123
TU142799 other upstream 929290 575260 ~ 579704 (+) True G114053
TU143157 other downstream 436469 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 461554 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 465632 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 467674 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 467674 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_02674254_02676647.mRNA True 2742 mRNA 0.48 1 CI01000046 2674060 ~ 2676801 (+)