RNA id: AMCG00018096


Basic Information

Item Value
RNA id AMCG00018096
length 3762
RNA type mRNA
GC content 0.56
exon number 24
gene id AMCG00018096
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1770156 ~ 1779659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCGTGCAAGAGCCGCAGCTGCGGCCTGGGACGGGTTTATTGATCAGTGACGTAATGGCAGACAGCGAGCGGCGGGCAAAGCGGCCCAAACAAACGCCGAGTAAGCGCCTGGTCGTCCCTCCCGCAGGGCTGTTGTCGGTTGCTATAGAAGACTCAAACAGCGCAGCCGGCTGTTGCGTTTCGTGCGTTTCTGATGCTCGAGTGATTTATTGTCTATAGTGGATCAAACTACAGTACAGCATTCAAACTAGAGGCTCCACCTGCATGGGTGGCAATAGAAGACAATTGCAGTTGCGAATCGTGTGTTAGTTGAAGCGCCGGGCAGTATTTGGATCCATTACACTTGATGTGTAGATGTATGTACTTGTCACGGTAAGGGAGCTGTAGTCCACCCGCGCTGGAGAGGAGGGGATCGGATGCGGTTTGGGACCCGTGTTTACCCGTCCAAGCGCCTCTTCACTGAGGTGCTGTTTGTCATTAACACTGAACAGTGCGGATCCGCAGGACGAGCCGCAGCCCTGCAGCACCGGCCCGTGGCGATGCACGCAGATGCTGTTGGAGGTCTATGCATTGACAGTCAGTGTGAGTGGTTTGCATGCACTGGGCGCCCGGGACGACAGagcaataaagcaataaagcaataaaacgACCGCAGGCACCTCGGTACGATGTCGGTGGCAGCGAGTGACTGTCTGACGGACGAAGAGCTGGAGGATCTGGGTGAAGATGGCCTCTCTGTTGCCACCTACATGTCTGAGTCGGGGAAGCGGCCCAGAAAAAAGAAGACGTCCGGCAAACCTCCACAGTCTCCGAAATCGCCTTATCTCTCCAGCACGAACCCCAAGAAGGCCGCTGTGTGGAGGTCTCTGAAGGGCGCGGGGACGATGCACATTGAGAACCCCGCGACCCGCGTTCCCAGAGAGTTCTGGCTGGCATCTCTTAAAAGTGGTGCTGGTCTGTCCCAGCCGCTGAAAGCAGACTACGATGCGTTGCCAGCCAGGGTCTCCTCGTGCTCCAGCACCCCAGAGTACCTGAAGGAAGCCCTGGGGATGAAGAAACCGAAGCACGCGCGCTCCTCCAGCAACGGATATGTGCCGGGAACCCCGGATTTCAAAGAAAAGGAAGACATGTACGACGAGATCATGGAGCTGAAAAAGGCGTTACGAGCCCAGAAATCGGAAAGCGACTTGATGAAGACGAAGCTGCGCCggctggaggaggagaacagCAAGAAGGAGAAGCGGATCGAGCAGCTGCTGGACCCGGCCAAGGGGTGCGAATACACGCGGAGTCTGGTGGACCGCAAGCACGATGCCAGCGCTATTGTGAACGGACTGAAGCAGAAGGTCCTGAAGTTGGAACAGCAGTGCAAAGAGAGGGACAGCGCGCTGACcaaaCTCCAGAATGATTTGAAGACGACAAATATAGAGGAAATGAAGATTGCGATGGAGACCTATTATGAAGAGgtCCAGAGACTCAGGATTTTACTCGCCAACGCAGAATCTGCAGAGAAAAAGGCGGAGAGCAGGGAAGTCCTGAAGCAGCAGAAGGTGCTCCACTCCACCATCCTGAGGCTGTCCAAGAACATCAagcagctgcaggaggagaACACATCTCTGAAGGCGGACCTGGACCGGGCCACGGAGATCCCCTCGGTCCCGAGCTCGGCCAGAGGTTATGCTGAGTGGAGTAAACAGCGGCTGCTGAGACGCATCGCCGAGCTGGAAAAAAAGCAGCCGGAGCCCGAGACTGGGAGTCCCCAGCTGCCGGACGGCGGCGCCAGAGCGACCCACGTAAGCGCTGTGGCCTCCGGCTCAGACCCACTGACCCTCGGCGTCATGGCGTCGCCCAAGACCTCGGACCCGCGGCAGGAGTGCGAGCGTCTGCGAGGGCTGGTCCGGAAGCTGAGGGAGGAGCGGGCCGACCTGCAGCACCAGCTGGCAGACAACATCGCTCTTGTGAAACAGCTGGCCGGCGAGAAAGCCGAGATCACCAAAGATGCCGAGCGGGCAAGGACGCTCGAGAGGGAGGCAGTGCGCCGGGAGTTCAGAGAAGAGATCCAGAGTCTGACGGAAACTATTACGAGGCTGGAAAAAGAGCTGGAGGACAGGAGACACGTCGGGGGGGACTCGAAAAGGGGACCCGTCTCTAGAGACCGTGGCAGCGGCGCCCATGGGGTTCAGGAACAAAAGCCCCAGAGCCGGGccaggagagaggaagaggcgGCGAAGACGATCCAGAAACACTGGCGCCAGCACCGACACAAAAATGAAAATCAAGGTGAAGATTCGGATGAGGCGGCCGTGGTGATCCAGGCGGCGCTCAGAGGACATCTGAGCCGAAAGGCACAGTTAGAAAATCTCACAGGACCCCCAAACAACACGCTGAGAAGCCCCCCAGACAAGGCTCCGCGGGGGAAGCGCCGGAGCGACGTCCTCGGCGCCGGAGACGACGGCGGCGGTGACGCACAGGACGTCACGTTGCTGCAGTCGGCGTTCCGGGGGCACCTGGCTCGCTCCGGACGGCACGGCCACAGCCTGGCCGCCGAGGGTGGGACGCCGAGCGCCGCCACGAGAGGAGAGCCCCCCGCCCCCACGGCCGCCCCAAGGAGGAGAGCGCCGGCTGGTGCCGACCGAAAATCGACGGCTCGAGATCTGAAAGCCACGGTGTGCAGTGATGAGGAGGTAGAGGAAGATCTTCCAGCGATGACGGGAAGGGAGGATGATGAAGAACGGACGTCCAAAGAGGCCAAGCGCCGCAGCGATCCCAGCAGCAGGCAGAGGAAGCCCCCCGCACTGAGCTCAGCGACGCCGAACCAGACCAGGCCTGCAGCCGCCAGGGCCGCCGACTCGGACGACTCGGACGACATCGTGGTGTCGCCGTCATGGCCCCCGCGACACAGGGACTCCTTCTTCTGAGCGCCGGGCGGCCGGGAAAGGACTCCACGGGTCTGCGTTACCGCTACGAACGACCCTCTCCAGCGGCTCTCCGGTGAGGCGCGGCGGTGGAAAGAAACAAACGGGCGGCTTGATAAACGAGCACTTAGAGTGTTTAGCGGTGGCTGTGAATTATGAGCGATGGTGTCTGATCTTGTGCCTTTTATATGGTTTACTCTTACATGTGACTCTGGGGAAAATAACGTGCCTTTATGTAAGAAACCTTGTTGTGTGTAAACGTGAAATATTTTAGcacatttatattgatatttacaGTTCTTTTCCATCAGAAGTAACTGATGCCTTCGGTTTACCTGTCGTGATGCAGAGAAACATGAACAGTCTGTAGGAAATCAGACAATgtgaacattaattaattaattaaagttaattaatttccCCTGAATCTCACTTGATTGATGATGCTGTGTTAGAACATTTGGAGATGGTCAGATTTGCATATTAGGGCCAGTTGACACTACACTTGACGTGCTGTTGTCTTAAAGGAAACGGGAAAAAGCACAATGTGTGAAACTGTCTGACTATGAATGAATATCGATCGCTCTGTTTCCACTTGTCGATACGAGGGAAGGCGGTCTTTTACCGGATCGACACACCGCGGTCCGATCGTGCTGTGGGACGTGTCCGGTTTAATGTTCGTGTCTTTAATCAGTGCTGGTTAGTGTCGACTCTTCAATGCATCTGTGCCTTAAATTGTATGGAATCATTAGGAATAAAAAGTGTATTCttcagtttttcttgtttttatatatctatttaaaagtacggtgtgtttttatattttatttgtaaataaaatactcg

Function

GO: NA

KEGG:

id description
K24677 IQCE; IQ domain-contaning protein E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143096 lncRNA upstream 235174 1533475 ~ 1534982 (+) True G114274
TU143063 lncRNA upstream 478305 1290555 ~ 1291851 (+) True G114253
TU143047 lncRNA upstream 501263 1266840 ~ 1268893 (+) True G114237
TU143011 lncRNA upstream 592061 1162892 ~ 1178095 (+) True G114205
TU142803 lncRNA upstream 1216652 553210 ~ 553504 (+) True G114056
TU143130 lncRNA downstream 84898 1864557 ~ 1865570 (+) True G114299
TU143159 lncRNA downstream 170602 1950261 ~ 1950500 (+) True G114321
TU143160 lncRNA downstream 171556 1951215 ~ 1951599 (+) True G114322
TU143161 lncRNA downstream 173215 1952874 ~ 1953264 (+) True G114323
TU143164 lncRNA downstream 190121 1969780 ~ 1970409 (+) True G114326
AMCG00018097 mRNA upstream 18091 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018091 mRNA upstream 258784 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018084 mRNA upstream 504622 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018081 mRNA upstream 728625 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018076 mRNA upstream 849042 919090 ~ 921114 (+) True AMCG00018076
AMCG00018104 mRNA downstream 16743 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018102 mRNA downstream 31776 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018105 mRNA downstream 193179 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018106 mRNA downstream 200527 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018115 mRNA downstream 300525 2080184 ~ 2095126 (+) True AMCG00018115
TU143029 other upstream 549940 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 891177 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 975366 777383 ~ 794790 (+) True G114123
TU142799 other upstream 1190452 575260 ~ 579704 (+) True G114053
TU143157 other downstream 168182 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 193267 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 197345 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 199387 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 199387 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile